MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:26.2 nTPM
HPA:26.2 nTPM
GTEx:27.8 nTPM
FANTOM5:84.3 Scaled Tags Per Million
Pig:26.5 nTPM
Mouse:34.4 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 26.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.1
2019 Male, age 18, unknown 27.4
1870 Female, age 42, unknown 25.0
2411 Female, age 72, unknown 24.7
2586 Male, age 75, left hemisphere 24.7
1833 Male, age 53, unknown 24.2
1827 Male, age 72, unknown 23.7
1830 Male, age 51, unknown 23.6
2219 Male, age 76, both hemispheres 22.6
2666 Male, age 74, left hemisphere 22.6
2828 Female, age 72, unknown 22.4
Dorsal raphe nucleus
nTPM: 24.4
2298 Female, age 72, unknown 25.4
1828 Male, age 53, unknown 24.7
2047 Male, age 72, unknown 24.3
2750 Male, age 76, both hemispheres 24.1
2016 Female, age 72, unknown 23.7
Inferior colliculus
nTPM: 22.7
1890 Male, age 53, unknown 22.9
2097 Female, age 72, unknown 22.9
1848 Female, age 42, unknown 22.7
2849 Male, age 72, unknown 22.2
Median raphe nucleus
nTPM: 23.8
2220 Male, age 76, midline 23.8
Pedunculopontine tegmental nucleus
nTPM: 23.8
1921 Female, age 85, both hemispheres 25.6
2334 Male, age 80, both hemispheres 23.0
2338 Male, age 61, both hemispheres 22.7
Periaquaductal grey, anterior
nTPM: 23.6
2502 Female, age 75, unknown 25.7
1795 Male, age 51, unknown 23.0
1947 Male, age 18, unknown 22.2
Periaquaductal grey, dorsal
nTPM: 24.2
2850 Male, age 76, both hemispheres 27.6
1831 Male, age 72, unknown 24.1
2464 Female, age 72, unknown 22.6
1840 Male, age 53, unknown 22.5
Periaquaductal grey, lateral
nTPM: 25.9
2272 Male, age 74, both hemispheres 29.2
2140 Male, age 76, both hemispheres 24.4
2053 Male, age 18, unknown 24.1
Pretectal area
nTPM: 26.2
2273 Male, age 74, both hemispheres 29.6
2007 Male, age 72, unknown 28.7
1816 Male, age 51, unknown 28.4
2407 Male, age 75, both hemispheres 27.3
1944 Female, age 72, unknown 26.1
1815 Male, age 53, unknown 25.9
1817 Female, age 42, unknown 25.7
2316 Male, age 76, right hemisphere 24.7
2224 Female, age 72, unknown 24.6
2667 Female, age 75, unknown 24.2
2825 Male, age 18, unknown 23.2
Red nucleus
nTPM: 23.6
2785 Male, age 18, unknown 26.9
1821 Female, age 72, unknown 25.3
2725 Female, age 75, unknown 24.2
2584 Male, age 75, left hemisphere 24.0
2588 Male, age 74, left hemisphere 23.6
1865 Male, age 51, unknown 23.4
1904 Male, age 53, unknown 23.0
1954 Female, age 42, unknown 22.8
2503 Female, age 72, unknown 22.5
2769 Male, age 72, unknown 22.5
2227 Male, age 72, unknown 22.3
2823 Male, age 76, right hemisphere 22.2
Substantia nigra
nTPM: 24.9
1941 Male, age 53, unknown 29.7
1889 Female, age 72, unknown 26.9
2241 Male, age 72, unknown 26.7
1851 Male, age 51, unknown 24.6
2409 Female, age 72, unknown 24.6
2699 Male, age 18, unknown 23.9
2583 Male, age 75, right hemisphere 23.6
1916 Female, age 42, unknown 23.4
2590 Female, age 75, unknown 23.2
2665 Male, age 74, both hemispheres 22.6
Superior colliculus
nTPM: 24.5
2664 Male, age 75, both hemispheres 25.9
2087 Female, age 72, unknown 25.3
1895 Male, age 76, right hemisphere 25.2
2261 Male, age 18, unknown 25.0
2668 Female, age 75, unknown 25.0
2587 Male, age 74, left hemisphere 24.5
1913 Female, age 42, unknown 24.3
1995 Male, age 72, unknown 24.0
1839 Male, age 51, unknown 23.4
1796 Male, age 53, unknown 22.4
Ventral tegmental area
nTPM: 23.3
1915 Female, age 42, unknown 24.2
1942 Male, age 51, unknown 23.7
2410 Female, age 72, unknown 23.1
2021 Male, age 53, unknown 23.0
2223 Female, age 72, unknown 22.8
2218 Male, age 76, both hemispheres 22.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 27.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 27.8
Samples: 139

Max nTPM: 63.1
Min nTPM: 13.9
Std nTPM: 5.9
Median nTPM: 27.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 63.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 49.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 49.2
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 40.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 38.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 38.2
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 37.7
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 36.7
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 36.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 35.4
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 35.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 84.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 84.3
FF:10158-103A5 76 years, female 84.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 26.5
Pig sample Sample description nTPM
Midbrain
nTPM: 26.5
Samples: 4

Max nTPM: 34.3
Min nTPM: 22.4
Sample A Female 34.3
Sample B Female 22.4
Sample C Male 26.1
Sample D Male 23.0
Periaqueductal gray
nTPM: 21.3
Samples: 3

Max nTPM: 22.1
Min nTPM: 19.6
Sample B Female 22.1
Sample C Male 22.1
Sample D Male 19.6
Substantia nigra
nTPM: 26.6
Samples: 4

Max nTPM: 29.9
Min nTPM: 24.9
Sample A Female 29.9
Sample B Female 24.9
Sample C Male 25.0
Sample D Male 26.4
Superior colliculi
nTPM: 26.5
Samples: 4

Max nTPM: 29.3
Min nTPM: 24.9
Sample A Female 26.5
Sample B Female 29.3
Sample C Male 25.3
Sample D Male 24.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 34.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 34.4
Samples: 4

Max nTPM: 35.8
Min nTPM: 33.3
Sample A Male 34.6
Sample B Male 35.8
Sample C Female 33.3
Sample D Female 33.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
73424023 Antisense, RP_051019_03_C06, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.