MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:28.5 nTPM
HPA:28.5 nTPM
GTEx:50.3 nTPM
FANTOM5:97.3 Scaled Tags Per Million
Mouse:65.5 nTPM
Allen mouse:5.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 28.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.2
2411 Female, age 72, unknown 28.1
1870 Female, age 42, unknown 27.8
2019 Male, age 18, unknown 27.8
1830 Male, age 51, unknown 27.7
1833 Male, age 53, unknown 27.6
2586 Male, age 75, left hemisphere 27.5
1827 Male, age 72, unknown 26.0
2219 Male, age 76, both hemispheres 24.2
2828 Female, age 72, unknown 23.5
2666 Male, age 74, left hemisphere 22.2
Dorsal raphe nucleus
nTPM: 27.1
2750 Male, age 76, both hemispheres 28.5
2298 Female, age 72, unknown 27.8
2016 Female, age 72, unknown 27.2
1828 Male, age 53, unknown 26.0
2047 Male, age 72, unknown 25.9
Inferior colliculus
nTPM: 27.3
2097 Female, age 72, unknown 30.9
1890 Male, age 53, unknown 27.0
1848 Female, age 42, unknown 26.8
2849 Male, age 72, unknown 24.4
Median raphe nucleus
nTPM: 26.8
2220 Male, age 76, midline 26.8
Pedunculopontine tegmental nucleus
nTPM: 27.2
2334 Male, age 80, both hemispheres 29.4
1921 Female, age 85, both hemispheres 27.4
2338 Male, age 61, both hemispheres 24.8
Periaquaductal grey, anterior
nTPM: 27.9
2502 Female, age 75, unknown 30.3
1947 Male, age 18, unknown 29.8
1795 Male, age 51, unknown 23.7
Periaquaductal grey, dorsal
nTPM: 26.9
2464 Female, age 72, unknown 27.4
1831 Male, age 72, unknown 27.2
2850 Male, age 76, both hemispheres 27.0
1840 Male, age 53, unknown 26.0
Periaquaductal grey, lateral
nTPM: 26.5
2272 Male, age 74, both hemispheres 27.7
2140 Male, age 76, both hemispheres 26.6
2053 Male, age 18, unknown 25.3
Pretectal area
nTPM: 28.5
2273 Male, age 74, both hemispheres 33.3
1944 Female, age 72, unknown 31.1
2224 Female, age 72, unknown 30.4
2007 Male, age 72, unknown 29.7
2667 Female, age 75, unknown 29.6
1816 Male, age 51, unknown 29.0
2316 Male, age 76, right hemisphere 27.5
1817 Female, age 42, unknown 26.9
1815 Male, age 53, unknown 26.5
2825 Male, age 18, unknown 26.2
2407 Male, age 75, both hemispheres 23.4
Red nucleus
nTPM: 26.8
1821 Female, age 72, unknown 30.9
1904 Male, age 53, unknown 30.4
1865 Male, age 51, unknown 28.0
1954 Female, age 42, unknown 27.9
2785 Male, age 18, unknown 27.8
2823 Male, age 76, right hemisphere 27.5
2227 Male, age 72, unknown 26.8
2503 Female, age 72, unknown 26.8
2769 Male, age 72, unknown 26.8
2725 Female, age 75, unknown 23.3
2584 Male, age 75, left hemisphere 22.6
2588 Male, age 74, left hemisphere 22.5
Substantia nigra
nTPM: 27.5
1941 Male, age 53, unknown 29.7
1889 Female, age 72, unknown 28.9
1916 Female, age 42, unknown 28.7
2241 Male, age 72, unknown 28.7
2665 Male, age 74, both hemispheres 27.2
1851 Male, age 51, unknown 26.7
2583 Male, age 75, right hemisphere 26.7
2699 Male, age 18, unknown 26.3
2409 Female, age 72, unknown 26.2
2590 Female, age 75, unknown 26.1
Superior colliculus
nTPM: 27.1
1913 Female, age 42, unknown 29.5
2668 Female, age 75, unknown 28.6
2087 Female, age 72, unknown 28.5
1995 Male, age 72, unknown 28.1
2587 Male, age 74, left hemisphere 27.6
1895 Male, age 76, right hemisphere 27.1
1839 Male, age 51, unknown 26.8
2261 Male, age 18, unknown 26.7
1796 Male, age 53, unknown 25.2
2664 Male, age 75, both hemispheres 22.5
Ventral tegmental area
nTPM: 27.8
1942 Male, age 51, unknown 29.6
1915 Female, age 42, unknown 28.0
2218 Male, age 76, both hemispheres 27.8
2223 Female, age 72, unknown 27.5
2410 Female, age 72, unknown 27.4
2021 Male, age 53, unknown 26.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 50.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 50.3
Samples: 139

Max nTPM: 88.5
Min nTPM: 21.0
Std nTPM: 12.4
Median nTPM: 49.6
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 88.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 82.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 79.1
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 76.9
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 76.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 73.7
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 72.6
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 69.7
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 68.1
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 67.8
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 67.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 97.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 97.3
FF:10158-103A5 76 years, female 97.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 65.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 65.5
Samples: 4

Max nTPM: 67.7
Min nTPM: 64.0
Sample A Male 67.7
Sample B Male 66.3
Sample C Female 64.0
Sample D Female 64.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.2
100144112 Antisense, RP_110407_03_A08, Mouse strain C57BL/6J (56 days, male) 5.2

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