BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:50.6 nTPM
HPA:50.6 nTPM
GTEx:50.6 nTPM
FANTOM5:120.9 Scaled Tags Per Million
Pig:53.8 nTPM
Mouse:59.4 nTPM
Allen mouse:0.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA053730Antibody HPA058604
Glial cells Not detectedNot detected
Neuronal cells Not detectedNot detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 50.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 42.5
2481 Female, age 94, left hemisphere 45.4
2846 Female, age 79, unknown 45.1
1857 Female, age 85, left hemisphere 44.6
2288 Male, age 75, left hemisphere 43.8
1854 Male, age 80, left hemisphere 42.6
2290 Female, age 72, unknown 41.9
1781 Male, age 74, unknown 39.6
2289 Male, age 61, right hemisphere 36.6
Claustrum
nTPM: 40.9
2392 Female, age 94, both hemispheres 47.4
2196 Female, age 79, unknown 43.8
2491 Male, age 75, both hemispheres 42.4
2198 Male, age 80, both hemispheres 41.9
1956 Male, age 74, unknown 40.9
2292 Female, age 85, both hemispheres 39.5
2568 Male, age 61, both hemispheres 38.2
2284 Female, age 91, both hemispheres 37.5
2645 Female, age 72, unknown 36.2
Globus pallidus, externus
nTPM: 49.0
2772 Female, age 79, unknown 52.2
2395 Male, age 75, both hemispheres 52.1
1996 Male, age 80, right hemisphere 51.4
2567 Female, age 72, unknown 44.8
2646 Male, age 61, right hemisphere 44.6
Globus pallidus, internus
nTPM: 50.6
2483 Female, age 94, right hemisphere 59.6
2287 Male, age 75, right hemisphere 57.1
2778 Female, age 91, both hemispheres 51.4
1818 Male, age 74, unknown 49.9
2037 Male, age 80, right hemisphere 48.9
2111 Female, age 85, right hemisphere 45.7
2566 Female, age 72, unknown 41.5
Nucleus accumbens
nTPM: 41.9
2391 Female, age 94, left hemisphere 46.7
2698 Female, age 72, unknown 45.9
1806 Female, age 85, left hemisphere 42.2
1856 Female, age 91, right hemisphere 42.1
2286 Male, age 75, left hemisphere 41.1
2732 Male, age 80, right hemisphere 40.4
1783 Male, age 74, unknown 39.3
2824 Male, age 61, right hemisphere 37.3
Nucleus basalis of Meynert
nTPM: 44.9
2821 Male, age 75, both hemispheres 45.7
2484 Female, age 94, left hemisphere 45.2
2569 Male, age 61, both hemispheres 45.0
2393 Male, age 80, right hemisphere 43.8
Nucleus of the diagonal band
nTPM: 43.0
1812 Female, age 91, both hemispheres 47.8
2775 Male, age 80, right hemisphere 44.5
2029 Male, age 61, right hemisphere 40.9
2195 Female, age 85, both hemispheres 40.9
1979 Male, age 74, unknown 40.7
Olfactory tubercle
nTPM: 40.9
1846 Male, age 80, right hemisphere 45.3
2856 Male, age 75, right hemisphere 41.2
2487 Female, age 94, left hemisphere 38.8
1998 Female, age 91, both hemispheres 38.2
Putamen
nTPM: 42.5
2647 Male, age 75, left hemisphere 44.7
1829 Male, age 74, unknown 44.1
1838 Male, age 80, right hemisphere 43.3
2482 Female, age 94, left hemisphere 43.3
2466 Female, age 79, unknown 42.0
1937 Female, age 91, right hemisphere 40.3
2489 Female, age 72, unknown 40.0
Septal nuclei
nTPM: 41.2
2394 Male, age 61, left hemisphere 44.1
2031 Female, age 72, unknown 43.0
2199 Male, age 80, right hemisphere 42.5
2009 Female, age 91, both hemispheres 41.8
2629 Female, age 94, right hemisphere 41.3
1960 Male, age 74, unknown 40.8
2059 Female, age 85, both hemispheres 35.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 50.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 46.2
Samples: 246

Max nTPM: 87.3
Min nTPM: 28.9
Std nTPM: 10.5
Median nTPM: 44.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 87.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 85.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 85.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 85.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 80.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 80.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 71.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 71.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 71.3
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 69.7
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 68.9
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 44.4
Samples: 246

Max nTPM: 119.6
Min nTPM: 27.3
Std nTPM: 12.2
Median nTPM: 42.0
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 119.6
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 90.3
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 88.6
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 86.2
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 81.5
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 79.8
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 77.6
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 75.9
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 70.7
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 70.1
GTEX-11PRG-0011-R6b-SM-DO923 50-59 years, male 69.5
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 50.6
Samples: 205

Max nTPM: 117.0
Min nTPM: 27.1
Std nTPM: 14.2
Median nTPM: 47.4
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 117.0
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 105.2
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 102.0
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 100.7
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 91.4
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 89.7
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 86.1
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 79.9
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 79.7
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 77.9
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 75.0
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 120.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 82.8
FF:10164-103B2 76 years, female 82.8
Globus pallidus
Scaled Tags Per Million: 120.9
FF:10175-103C4 60 years, female 126.2
FF:10161-103A8 76 years, female 115.6
Nucleus accumbens
Scaled Tags Per Million: 87.2
FF:10037-101F1 23-56 years, mixed 87.2
Putamen
Scaled Tags Per Million: 80.5
FF:10176-103C5 60 years, female 80.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 53.8
Pig sample Sample description nTPM
Caudate
nTPM: 34.4
Samples: 4

Max nTPM: 41.7
Min nTPM: 29.1
Sample A Female 34.6
Sample B Female 29.1
Sample C Male 41.7
Sample D Male 32.1
Putamen
nTPM: 53.9
Samples: 4

Max nTPM: 68.3
Min nTPM: 37.8
Sample A Female 61.9
Sample B Female 37.8
Sample C Male 68.3
Sample D Male 47.4
Septum
nTPM: 47.4
Samples: 4

Max nTPM: 58.3
Min nTPM: 38.5
Sample A Female 48.1
Sample B Female 38.5
Sample C Male 58.3
Sample D Male 44.6
Ventral pallidum
nTPM: 44.9
Samples: 4

Max nTPM: 56.8
Min nTPM: 37.2
Sample A Female 37.2
Sample B Female 43.6
Sample C Male 56.8
Sample D Male 41.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 59.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 50.5
Samples: 4

Max nTPM: 56.5
Min nTPM: 43.5
Sample A Male 47.6
Sample B Male 43.5
Sample C Female 56.5
Sample D Female 54.4
Septum
nTPM: 57.0
Samples: 4

Max nTPM: 61.3
Min nTPM: 52.4
Sample A Male 52.4
Sample B Male 59.2
Sample C Female 61.3
Sample D Female 54.9
Ventral forebrain
nTPM: 59.4
Samples: 4

Max nTPM: 64.6
Min nTPM: 55.1
Sample A Male 58.3
Sample B Male 55.1
Sample C Female 64.6
Sample D Female 59.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
67765697 Antisense, RP_040916_01_C10, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.2
67765697 Antisense, RP_040916_01_C10, Mouse strain C57BL/6J (56 days, male) 0.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.