MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:18.9 nTPM
HPA:18.9 nTPM
GTEx:53.0 nTPM
FANTOM5:22.5 Scaled Tags Per Million
Pig:2.2 nTPM
Mouse:28.0 nTPM
Allen mouse:1.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 18.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 17.0
2586 Male, age 75, left hemisphere 30.2
2828 Female, age 72, unknown 19.3
1827 Male, age 72, unknown 16.9
2666 Male, age 74, left hemisphere 16.8
1833 Male, age 53, unknown 15.6
2019 Male, age 18, unknown 15.4
2411 Female, age 72, unknown 15.4
1870 Female, age 42, unknown 15.1
1830 Male, age 51, unknown 14.5
2219 Male, age 76, both hemispheres 10.8
Dorsal raphe nucleus
nTPM: 15.2
2016 Female, age 72, unknown 17.0
2298 Female, age 72, unknown 15.7
2750 Male, age 76, both hemispheres 15.2
1828 Male, age 53, unknown 14.8
2047 Male, age 72, unknown 13.4
Inferior colliculus
nTPM: 17.8
1848 Female, age 42, unknown 18.6
2849 Male, age 72, unknown 18.0
2097 Female, age 72, unknown 17.3
1890 Male, age 53, unknown 17.0
Median raphe nucleus
nTPM: 14.5
2220 Male, age 76, midline 14.5
Pedunculopontine tegmental nucleus
nTPM: 17.9
2338 Male, age 61, both hemispheres 19.2
2334 Male, age 80, both hemispheres 17.4
1921 Female, age 85, both hemispheres 17.3
Periaquaductal grey, anterior
nTPM: 17.9
2502 Female, age 75, unknown 20.1
1795 Male, age 51, unknown 19.0
1947 Male, age 18, unknown 14.7
Periaquaductal grey, dorsal
nTPM: 14.3
2850 Male, age 76, both hemispheres 16.0
1831 Male, age 72, unknown 14.9
1840 Male, age 53, unknown 13.4
2464 Female, age 72, unknown 13.0
Periaquaductal grey, lateral
nTPM: 14.3
2053 Male, age 18, unknown 16.0
2140 Male, age 76, both hemispheres 13.9
2272 Male, age 74, both hemispheres 12.9
Pretectal area
nTPM: 16.5
2007 Male, age 72, unknown 22.9
1816 Male, age 51, unknown 20.3
1817 Female, age 42, unknown 19.9
1944 Female, age 72, unknown 17.4
2825 Male, age 18, unknown 17.4
1815 Male, age 53, unknown 16.4
2667 Female, age 75, unknown 15.9
2316 Male, age 76, right hemisphere 14.5
2224 Female, age 72, unknown 13.0
2273 Male, age 74, both hemispheres 12.5
2407 Male, age 75, both hemispheres 11.1
Red nucleus
nTPM: 18.9
2503 Female, age 72, unknown 22.4
2769 Male, age 72, unknown 21.4
2588 Male, age 74, left hemisphere 20.8
2785 Male, age 18, unknown 20.0
2823 Male, age 76, right hemisphere 19.2
2227 Male, age 72, unknown 18.5
1821 Female, age 72, unknown 18.2
1904 Male, age 53, unknown 18.1
2584 Male, age 75, left hemisphere 17.8
1954 Female, age 42, unknown 17.4
2725 Female, age 75, unknown 16.8
1865 Male, age 51, unknown 15.6
Substantia nigra
nTPM: 14.8
1941 Male, age 53, unknown 18.4
2665 Male, age 74, both hemispheres 18.3
1889 Female, age 72, unknown 17.7
2583 Male, age 75, right hemisphere 17.5
1916 Female, age 42, unknown 16.6
1851 Male, age 51, unknown 14.9
2590 Female, age 75, unknown 14.8
2699 Male, age 18, unknown 14.5
2241 Male, age 72, unknown 7.9
2409 Female, age 72, unknown 7.2
Superior colliculus
nTPM: 17.0
2664 Male, age 75, both hemispheres 21.0
1995 Male, age 72, unknown 19.4
1796 Male, age 53, unknown 17.4
2087 Female, age 72, unknown 17.2
2261 Male, age 18, unknown 16.5
2587 Male, age 74, left hemisphere 16.1
2668 Female, age 75, unknown 16.1
1913 Female, age 42, unknown 15.8
1839 Male, age 51, unknown 15.6
1895 Male, age 76, right hemisphere 14.5
Ventral tegmental area
nTPM: 17.3
2410 Female, age 72, unknown 18.7
1915 Female, age 42, unknown 18.0
1942 Male, age 51, unknown 18.0
2218 Male, age 76, both hemispheres 17.6
2021 Male, age 53, unknown 15.7
2223 Female, age 72, unknown 15.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 53.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 53.0
Samples: 139

Max nTPM: 139.2
Min nTPM: 20.2
Std nTPM: 18.0
Median nTPM: 49.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 139.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 113.2
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 95.3
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 91.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 87.7
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 86.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 83.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 81.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 80.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 77.5
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 77.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 22.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 22.5
FF:10158-103A5 76 years, female 22.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 2.2
Pig sample Sample description nTPM
Midbrain
nTPM: 2.2
Samples: 4

Max nTPM: 3.7
Min nTPM: 1.3
Sample A Female 3.7
Sample B Female 1.6
Sample C Male 2.1
Sample D Male 1.3
Periaqueductal gray
nTPM: 1.4
Samples: 3

Max nTPM: 1.9
Min nTPM: 0.9
Sample B Female 1.9
Sample C Male 1.5
Sample D Male 0.9
Substantia nigra
nTPM: 1.9
Samples: 4

Max nTPM: 2.9
Min nTPM: 0.8
Sample A Female 2.9
Sample B Female 2.7
Sample C Male 0.8
Sample D Male 1.2
Superior colliculi
nTPM: 2.2
Samples: 4

Max nTPM: 3.5
Min nTPM: 1.1
Sample A Female 2.4
Sample B Female 3.5
Sample C Male 1.1
Sample D Male 1.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 28.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 28.0
Samples: 4

Max nTPM: 32.7
Min nTPM: 22.8
Sample A Male 32.7
Sample B Male 28.2
Sample C Female 22.8
Sample D Female 28.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.1
69202794 Antisense, RP_050324_04_D06, Mouse strain C57BL/6J (56 days, male) 1.4
70812972 Antisense, RP_050712_02_H08, Mouse strain C57BL/6J (56 days, male) 0.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
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