BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:18.7 nTPM
HPA:18.7 nTPM
GTEx:62.7 nTPM
FANTOM5:151.9 Scaled Tags Per Million
Pig:596.3 nTPM

CAUDATE - Antibody stainingi
Antibody HPA028483Antibody HPA028557Antibody HPA029384
Glial cells Not detectedNot detectedLow
Neuronal cells MediumNot detectedLow







BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 18.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 5.9
1857 Female, age 85, left hemisphere 10.3
1854 Male, age 80, left hemisphere 9.4
1781 Male, age 74, unknown 5.7
2290 Female, age 72, unknown 4.9
2846 Female, age 79, unknown 4.8
2481 Female, age 94, left hemisphere 4.2
2289 Male, age 61, right hemisphere 4.1
2288 Male, age 75, left hemisphere 3.9
Claustrum
nTPM: 4.1
2196 Female, age 79, unknown 10.6
2392 Female, age 94, both hemispheres 5.1
2491 Male, age 75, both hemispheres 4.2
2284 Female, age 91, both hemispheres 3.5
2198 Male, age 80, both hemispheres 3.2
2568 Male, age 61, both hemispheres 2.9
1956 Male, age 74, unknown 2.6
2292 Female, age 85, both hemispheres 2.5
2645 Female, age 72, unknown 2.3
Globus pallidus, externus
nTPM: 3.1
2395 Male, age 75, both hemispheres 3.7
1996 Male, age 80, right hemisphere 3.4
2646 Male, age 61, right hemisphere 3.4
2772 Female, age 79, unknown 2.7
2567 Female, age 72, unknown 2.2
Globus pallidus, internus
nTPM: 2.8
2566 Female, age 72, unknown 4.1
2483 Female, age 94, right hemisphere 3.8
2037 Male, age 80, right hemisphere 2.7
2287 Male, age 75, right hemisphere 2.7
2111 Female, age 85, right hemisphere 2.4
2778 Female, age 91, both hemispheres 2.3
1818 Male, age 74, unknown 1.8
Nucleus accumbens
nTPM: 18.7
1856 Female, age 91, right hemisphere 44.9
2824 Male, age 61, right hemisphere 24.0
2732 Male, age 80, right hemisphere 19.9
2698 Female, age 72, unknown 19.8
1806 Female, age 85, left hemisphere 17.0
1783 Male, age 74, unknown 16.7
2286 Male, age 75, left hemisphere 3.9
2391 Female, age 94, left hemisphere 3.6
Nucleus basalis of Meynert
nTPM: 4.2
2393 Male, age 80, right hemisphere 4.8
2821 Male, age 75, both hemispheres 4.7
2484 Female, age 94, left hemisphere 4.0
2569 Male, age 61, both hemispheres 3.2
Nucleus of the diagonal band
nTPM: 8.1
1979 Male, age 74, unknown 20.7
1812 Female, age 91, both hemispheres 6.5
2029 Male, age 61, right hemisphere 4.6
2775 Male, age 80, right hemisphere 4.6
2195 Female, age 85, both hemispheres 4.4
Olfactory tubercle
nTPM: 5.9
2487 Female, age 94, left hemisphere 7.3
1998 Female, age 91, both hemispheres 7.1
1846 Male, age 80, right hemisphere 4.8
2856 Male, age 75, right hemisphere 4.4
Putamen
nTPM: 7.0
1937 Female, age 91, right hemisphere 16.4
1838 Male, age 80, right hemisphere 14.7
2482 Female, age 94, left hemisphere 4.5
2466 Female, age 79, unknown 3.7
1829 Male, age 74, unknown 3.3
2489 Female, age 72, unknown 3.2
2647 Male, age 75, left hemisphere 3.1
Septal nuclei
nTPM: 6.0
2199 Male, age 80, right hemisphere 9.5
2394 Male, age 61, left hemisphere 9.5
2059 Female, age 85, both hemispheres 5.9
2009 Female, age 91, both hemispheres 5.2
2629 Female, age 94, right hemisphere 4.4
2031 Female, age 72, unknown 3.7
1960 Male, age 74, unknown 3.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 62.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 10.7
Samples: 246

Max nTPM: 75.7
Min nTPM: 1.4
Std nTPM: 8.9
Median nTPM: 8.3
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 75.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 55.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 46.8
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 39.7
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 35.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 32.9
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 32.7
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 32.3
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 31.4
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 30.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 29.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 62.7
Samples: 246

Max nTPM: 393.8
Min nTPM: 2.3
Std nTPM: 43.7
Median nTPM: 58.8
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 393.8
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 199.1
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 178.8
GTEX-1JMLX-0011-R6b-SM-EXUT9 50-59 years, male 164.0
GTEX-XLM4-0011-R6A-SM-4AT4B 60-69 years, male 141.9
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 141.2
GTEX-1MA7X-0011-R6a-SM-EYYWR 60-69 years, male 136.2
GTEX-15CHQ-0011-R6b-SM-69LOX 60-69 years, male 134.7
GTEX-1CB4G-0011-R6b-SM-9QEGO 60-69 years, male 134.5
GTEX-1H1CY-0011-R6b-SM-CE6RP 60-69 years, female 132.6
GTEX-15ER7-0011-R6a-SM-6M46M 20-29 years, female 129.2
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Brain - Putamen (basal ganglia)
Average nTPM: 11.8
Samples: 205

Max nTPM: 84.3
Min nTPM: 1.4
Std nTPM: 12.5
Median nTPM: 7.5
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 84.3
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 72.5
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 59.4
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 55.6
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 53.3
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 52.3
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 44.5
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 41.0
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 37.7
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 37.7
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 35.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 151.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 62.5
FF:10164-103B2 76 years, female 62.5
Globus pallidus
Scaled Tags Per Million: 4.6
FF:10175-103C4 60 years, female 6.3
FF:10161-103A8 76 years, female 3.0
Nucleus accumbens
Scaled Tags Per Million: 35.8
FF:10037-101F1 23-56 years, mixed 35.8
Putamen
Scaled Tags Per Million: 151.9
FF:10176-103C5 60 years, female 151.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 596.3
Pig sample Sample description nTPM
Caudate
nTPM: 271.5
Samples: 4

Max nTPM: 316.1
Min nTPM: 217.6
Sample A Female 316.1
Sample B Female 289.0
Sample C Male 263.1
Sample D Male 217.6
Putamen
nTPM: 193.1
Samples: 4

Max nTPM: 198.1
Min nTPM: 186.5
Sample A Female 190.9
Sample B Female 186.5
Sample C Male 196.9
Sample D Male 198.1
Septum
nTPM: 596.3
Samples: 4

Max nTPM: 728.8
Min nTPM: 444.1
Sample A Female 531.7
Sample B Female 444.1
Sample C Male 728.8
Sample D Male 680.7
Ventral pallidum
nTPM: 362.0
Samples: 4

Max nTPM: 427.1
Min nTPM: 309.6
Sample A Female 427.1
Sample B Female 365.0
Sample C Male 346.2
Sample D Male 309.6

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The Human Protein Atlas

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