BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:7.9 nTPM
HPA:7.9 nTPM
GTEx:6.8 nTPM
FANTOM5:9.0 Scaled Tags Per Million
Pig:5.4 nTPM
Mouse:7.7 nTPM
Allen mouse:0.2 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

CAUDATE - Antibody stainingi
Antibody HPA027043
Glial cells Not detected
Neuronal cells Medium


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 7.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 5.5
2481 Female, age 94, left hemisphere 7.4
2289 Male, age 61, right hemisphere 5.7
2290 Female, age 72, unknown 5.7
2288 Male, age 75, left hemisphere 5.6
1857 Female, age 85, left hemisphere 5.1
1781 Male, age 74, unknown 5.0
1854 Male, age 80, left hemisphere 4.8
2846 Female, age 79, unknown 4.6
Claustrum
nTPM: 5.5
2392 Female, age 94, both hemispheres 6.3
2491 Male, age 75, both hemispheres 6.2
1956 Male, age 74, unknown 5.6
2196 Female, age 79, unknown 5.5
2284 Female, age 91, both hemispheres 5.4
2292 Female, age 85, both hemispheres 5.4
2645 Female, age 72, unknown 5.3
2568 Male, age 61, both hemispheres 5.1
2198 Male, age 80, both hemispheres 4.8
Globus pallidus, externus
nTPM: 7.2
2646 Male, age 61, right hemisphere 8.6
1996 Male, age 80, right hemisphere 8.0
2567 Female, age 72, unknown 7.8
2772 Female, age 79, unknown 6.0
2395 Male, age 75, both hemispheres 5.8
Globus pallidus, internus
nTPM: 7.5
2483 Female, age 94, right hemisphere 8.8
2037 Male, age 80, right hemisphere 7.8
2111 Female, age 85, right hemisphere 7.6
2566 Female, age 72, unknown 7.6
2778 Female, age 91, both hemispheres 7.3
1818 Male, age 74, unknown 6.9
2287 Male, age 75, right hemisphere 6.5
Nucleus accumbens
nTPM: 5.9
2732 Male, age 80, right hemisphere 9.0
2391 Female, age 94, left hemisphere 6.4
2698 Female, age 72, unknown 6.3
2286 Male, age 75, left hemisphere 5.3
1806 Female, age 85, left hemisphere 5.2
1856 Female, age 91, right hemisphere 5.2
1783 Male, age 74, unknown 5.0
2824 Male, age 61, right hemisphere 4.7
Nucleus basalis of Meynert
nTPM: 6.5
2569 Male, age 61, both hemispheres 9.6
2484 Female, age 94, left hemisphere 5.9
2393 Male, age 80, right hemisphere 5.5
2821 Male, age 75, both hemispheres 4.8
Nucleus of the diagonal band
nTPM: 7.3
1979 Male, age 74, unknown 10.3
2195 Female, age 85, both hemispheres 8.0
2775 Male, age 80, right hemisphere 6.5
1812 Female, age 91, both hemispheres 6.0
2029 Male, age 61, right hemisphere 5.5
Olfactory tubercle
nTPM: 5.8
2487 Female, age 94, left hemisphere 6.8
1846 Male, age 80, right hemisphere 6.4
2856 Male, age 75, right hemisphere 5.1
1998 Female, age 91, both hemispheres 5.0
Putamen
nTPM: 5.7
2482 Female, age 94, left hemisphere 6.6
2647 Male, age 75, left hemisphere 6.6
2489 Female, age 72, unknown 6.1
1829 Male, age 74, unknown 5.9
1937 Female, age 91, right hemisphere 5.5
1838 Male, age 80, right hemisphere 4.8
2466 Female, age 79, unknown 4.6
Septal nuclei
nTPM: 7.9
2199 Male, age 80, right hemisphere 10.0
2059 Female, age 85, both hemispheres 9.6
2394 Male, age 61, left hemisphere 8.4
2629 Female, age 94, right hemisphere 8.0
2009 Female, age 91, both hemispheres 7.3
1960 Male, age 74, unknown 7.0
2031 Female, age 72, unknown 5.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 6.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 6.6
Samples: 246

Max nTPM: 22.1
Min nTPM: 1.4
Std nTPM: 2.7
Median nTPM: 6.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 22.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 18.4
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 16.8
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 13.2
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 13.2
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 12.6
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 12.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 12.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 12.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 11.9
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 11.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 6.8
Samples: 246

Max nTPM: 19.6
Min nTPM: 1.8
Std nTPM: 2.8
Median nTPM: 6.1
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 19.6
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 18.8
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 16.2
GTEX-13OVJ-0011-R6b-SM-5L3GH 50-59 years, female 15.8
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 15.7
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 15.3
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 14.2
GTEX-13SLW-0011-R6a-SM-5O9BH 70-79 years, male 13.7
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 13.3
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 12.9
GTEX-1GZ2Q-0011-R6a-SM-9OSWM 40-49 years, male 12.9
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Brain - Putamen (basal ganglia)
Average nTPM: 6.3
Samples: 205

Max nTPM: 14.7
Min nTPM: 1.2
Std nTPM: 2.4
Median nTPM: 6.1
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 14.7
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 12.5
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 11.7
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 11.6
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 11.6
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 11.5
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 11.3
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 11.1
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 10.9
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 10.9
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 10.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 9.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 9.0
FF:10164-103B2 76 years, female 9.0
Globus pallidus
Scaled Tags Per Million: 7.7
FF:10161-103A8 76 years, female 11.5
FF:10175-103C4 60 years, female 3.9
Nucleus accumbens
Scaled Tags Per Million: 9.0
FF:10037-101F1 23-56 years, mixed 9.0
Putamen
Scaled Tags Per Million: 6.7
FF:10176-103C5 60 years, female 6.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 5.4
Pig sample Sample description nTPM
Caudate
nTPM: 3.6
Samples: 4

Max nTPM: 3.7
Min nTPM: 3.2
Sample A Female 3.2
Sample B Female 3.6
Sample C Male 3.7
Sample D Male 3.7
Putamen
nTPM: 3.1
Samples: 4

Max nTPM: 4.8
Min nTPM: 2.3
Sample A Female 4.8
Sample B Female 2.5
Sample C Male 2.3
Sample D Male 2.9
Septum
nTPM: 5.4
Samples: 4

Max nTPM: 9.3
Min nTPM: 3.9
Sample A Female 4.0
Sample B Female 3.9
Sample C Male 9.3
Sample D Male 4.2
Ventral pallidum
nTPM: 4.3
Samples: 4

Max nTPM: 8.6
Min nTPM: 2.7
Sample A Female 2.8
Sample B Female 2.7
Sample C Male 8.6
Sample D Male 3.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 7.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 3.8
Samples: 4

Max nTPM: 5.6
Min nTPM: 3.1
Sample A Male 3.1
Sample B Male 5.6
Sample C Female 3.1
Sample D Female 3.2
Septum
nTPM: 7.7
Samples: 4

Max nTPM: 8.3
Min nTPM: 7.2
Sample A Male 7.3
Sample B Male 7.2
Sample C Female 7.8
Sample D Female 8.3
Ventral forebrain
nTPM: 4.9
Samples: 4

Max nTPM: 5.8
Min nTPM: 3.3
Sample A Male 5.8
Sample B Male 5.6
Sample C Female 3.3
Sample D Female 5.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.2
68666834 Antisense, RP_050201_01_A09, Mouse strain C57BL/6J (56 days, male) 0.2
Pallidum
Expression energy: 0.2
68666834 Antisense, RP_050201_01_A09, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

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