BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:6.3 nTPM
HPA:6.3 nTPM
GTEx:22.6 nTPM
FANTOM5:34.5 Scaled Tags Per Million
Pig:0.6 nTPM
Mouse:3.4 nTPM
Allen mouse:5.4 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA054908
Glial cells Not detected
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 6.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 5.8
2289 Male, age 61, right hemisphere 9.3
2290 Female, age 72, unknown 7.8
1854 Male, age 80, left hemisphere 7.7
2288 Male, age 75, left hemisphere 6.2
2846 Female, age 79, unknown 5.4
1857 Female, age 85, left hemisphere 5.1
1781 Male, age 74, unknown 4.5
2481 Female, age 94, left hemisphere 0.6
Claustrum
nTPM: 2.9
2568 Male, age 61, both hemispheres 6.0
2645 Female, age 72, unknown 4.8
2491 Male, age 75, both hemispheres 3.2
2196 Female, age 79, unknown 3.1
2284 Female, age 91, both hemispheres 3.1
2392 Female, age 94, both hemispheres 1.9
1956 Male, age 74, unknown 1.6
2198 Male, age 80, both hemispheres 1.2
2292 Female, age 85, both hemispheres 1.1
Globus pallidus, externus
nTPM: 0.2
2646 Male, age 61, right hemisphere 1.3
1996 Male, age 80, right hemisphere 0.0
2395 Male, age 75, both hemispheres 0.0
2567 Female, age 72, unknown 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 0.0
1818 Male, age 74, unknown 0.0
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
2287 Male, age 75, right hemisphere 0.0
2483 Female, age 94, right hemisphere 0.0
2566 Female, age 72, unknown 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 5.3
2824 Male, age 61, right hemisphere 8.8
1783 Male, age 74, unknown 7.6
1856 Female, age 91, right hemisphere 6.9
1806 Female, age 85, left hemisphere 5.4
2286 Male, age 75, left hemisphere 5.4
2698 Female, age 72, unknown 3.8
2732 Male, age 80, right hemisphere 2.9
2391 Female, age 94, left hemisphere 1.3
Nucleus basalis of Meynert
nTPM: 4.2
2393 Male, age 80, right hemisphere 6.4
2484 Female, age 94, left hemisphere 4.7
2821 Male, age 75, both hemispheres 3.3
2569 Male, age 61, both hemispheres 2.6
Nucleus of the diagonal band
nTPM: 3.3
2029 Male, age 61, right hemisphere 5.0
1979 Male, age 74, unknown 4.1
2195 Female, age 85, both hemispheres 3.4
2775 Male, age 80, right hemisphere 2.7
1812 Female, age 91, both hemispheres 1.4
Olfactory tubercle
nTPM: 2.3
2856 Male, age 75, right hemisphere 3.1
1998 Female, age 91, both hemispheres 2.7
2487 Female, age 94, left hemisphere 2.0
1846 Male, age 80, right hemisphere 1.5
Putamen
nTPM: 6.3
1838 Male, age 80, right hemisphere 9.6
2489 Female, age 72, unknown 8.3
2466 Female, age 79, unknown 7.6
1937 Female, age 91, right hemisphere 5.8
2647 Male, age 75, left hemisphere 5.8
1829 Male, age 74, unknown 5.0
2482 Female, age 94, left hemisphere 2.2
Septal nuclei
nTPM: 2.5
2059 Female, age 85, both hemispheres 3.5
1960 Male, age 74, unknown 3.1
2009 Female, age 91, both hemispheres 2.8
2394 Male, age 61, left hemisphere 2.6
2199 Male, age 80, right hemisphere 2.4
2031 Female, age 72, unknown 2.1
2629 Female, age 94, right hemisphere 1.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 22.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 17.0
Samples: 246

Max nTPM: 42.7
Min nTPM: 0.4
Std nTPM: 9.1
Median nTPM: 16.4
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 42.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 41.5
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 41.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 39.1
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 35.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 35.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 34.9
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 34.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 34.8
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 34.7
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 34.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 22.6
Samples: 246

Max nTPM: 49.6
Min nTPM: 0.5
Std nTPM: 12.1
Median nTPM: 23.9
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 49.6
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 48.1
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 46.1
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 45.7
GTEX-14ASI-0011-R6a-SM-5S2UZ 60-69 years, male 44.0
GTEX-18A6Q-0011-R6a-SM-7LG6R 60-69 years, male 43.9
GTEX-ZXG5-0011-R6a-SM-57WBZ 60-69 years, male 43.4
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 43.4
GTEX-14BMV-0011-R6b-SM-5YY9I 50-59 years, male 42.7
GTEX-17F97-0011-R6a-SM-7EPGS 50-59 years, male 42.1
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 41.7
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Brain - Putamen (basal ganglia)
Average nTPM: 14.2
Samples: 205

Max nTPM: 41.5
Min nTPM: 0.4
Std nTPM: 9.0
Median nTPM: 13.7
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 41.5
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 33.2
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 32.7
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 31.9
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 31.4
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 31.2
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 31.1
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 30.5
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 30.5
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 30.4
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 29.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 34.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 34.5
FF:10164-103B2 76 years, female 34.5
Globus pallidus
Scaled Tags Per Million: 9.1
FF:10175-103C4 60 years, female 12.6
FF:10161-103A8 76 years, female 5.6
Nucleus accumbens
Scaled Tags Per Million: 13.1
FF:10037-101F1 23-56 years, mixed 13.1
Putamen
Scaled Tags Per Million: 25.1
FF:10176-103C5 60 years, female 25.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 0.6
Pig sample Sample description nTPM
Caudate
nTPM: 0.5
Samples: 4

Max nTPM: 0.5
Min nTPM: 0.3
Sample A Female 0.5
Sample B Female 0.5
Sample C Male 0.5
Sample D Male 0.3
Putamen
nTPM: 0.6
Samples: 4

Max nTPM: 0.7
Min nTPM: 0.5
Sample A Female 0.7
Sample B Female 0.5
Sample C Male 0.5
Sample D Male 0.7
Septum
nTPM: 0.6
Samples: 4

Max nTPM: 0.9
Min nTPM: 0.4
Sample A Female 0.6
Sample B Female 0.9
Sample C Male 0.4
Sample D Male 0.6
Ventral pallidum
nTPM: 0.6
Samples: 4

Max nTPM: 0.7
Min nTPM: 0.5
Sample A Female 0.5
Sample B Female 0.7
Sample C Male 0.6
Sample D Male 0.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 3.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 3.4
Samples: 4

Max nTPM: 4.1
Min nTPM: 2.9
Sample A Male 4.1
Sample B Male 2.9
Sample C Female 3.2
Sample D Female 3.2
Septum
nTPM: 2.0
Samples: 4

Max nTPM: 2.2
Min nTPM: 1.7
Sample A Male 1.9
Sample B Male 1.7
Sample C Female 2.0
Sample D Female 2.2
Ventral forebrain
nTPM: 2.6
Samples: 4

Max nTPM: 3.5
Min nTPM: 2.1
Sample A Male 3.5
Sample B Male 2.3
Sample C Female 2.1
Sample D Female 2.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 5.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 5.4
74583150 Antisense, RP_051214_02_F07, Mouse strain C57BL/6J (56 days, male) 8.7
68745120 Antisense, RP_050210_01_C08, Mouse strain C57BL/6J (56 days, male) 7.3
69113919 Antisense, RP_050317_01_A07, Mouse strain C57BL/6J (56 days, male) 0.3
Pallidum
Expression energy: 3.5
74583150 Antisense, RP_051214_02_F07, Mouse strain C57BL/6J (56 days, male) 5.1
68745120 Antisense, RP_050210_01_C08, Mouse strain C57BL/6J (56 days, male) 5.1
69113919 Antisense, RP_050317_01_A07, Mouse strain C57BL/6J (56 days, male) 0.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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