MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:30.1 nTPM
HPA:30.1 nTPM
GTEx:20.5 nTPM
FANTOM5:57.0 Scaled Tags Per Million
Pig:63.1 nTPM
Mouse:17.2 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 30.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 18.7
1833 Male, age 53, unknown 21.4
2828 Female, age 72, unknown 21.2
2586 Male, age 75, left hemisphere 20.9
1827 Male, age 72, unknown 20.8
2411 Female, age 72, unknown 20.0
1830 Male, age 51, unknown 19.2
1870 Female, age 42, unknown 16.8
2666 Male, age 74, left hemisphere 16.7
2219 Male, age 76, both hemispheres 15.1
2019 Male, age 18, unknown 14.6
Dorsal raphe nucleus
nTPM: 27.8
2016 Female, age 72, unknown 31.5
2047 Male, age 72, unknown 31.0
2298 Female, age 72, unknown 28.8
1828 Male, age 53, unknown 27.3
2750 Male, age 76, both hemispheres 20.4
Inferior colliculus
nTPM: 21.5
1848 Female, age 42, unknown 23.7
1890 Male, age 53, unknown 22.5
2849 Male, age 72, unknown 21.5
2097 Female, age 72, unknown 18.5
Median raphe nucleus
nTPM: 24.4
2220 Male, age 76, midline 24.4
Pedunculopontine tegmental nucleus
nTPM: 23.0
2334 Male, age 80, both hemispheres 24.2
2338 Male, age 61, both hemispheres 23.3
1921 Female, age 85, both hemispheres 21.4
Periaquaductal grey, anterior
nTPM: 21.0
2502 Female, age 75, unknown 22.8
1947 Male, age 18, unknown 20.2
1795 Male, age 51, unknown 20.1
Periaquaductal grey, dorsal
nTPM: 30.1
2850 Male, age 76, both hemispheres 41.0
1840 Male, age 53, unknown 30.7
1831 Male, age 72, unknown 24.8
2464 Female, age 72, unknown 23.8
Periaquaductal grey, lateral
nTPM: 27.3
2140 Male, age 76, both hemispheres 32.6
2272 Male, age 74, both hemispheres 25.3
2053 Male, age 18, unknown 24.0
Pretectal area
nTPM: 21.1
2273 Male, age 74, both hemispheres 25.6
2667 Female, age 75, unknown 23.9
2825 Male, age 18, unknown 23.9
1816 Male, age 51, unknown 23.6
2224 Female, age 72, unknown 22.1
1944 Female, age 72, unknown 21.5
1817 Female, age 42, unknown 21.4
2316 Male, age 76, right hemisphere 20.8
1815 Male, age 53, unknown 20.6
2407 Male, age 75, both hemispheres 16.7
2007 Male, age 72, unknown 12.4
Red nucleus
nTPM: 19.4
1954 Female, age 42, unknown 22.5
2725 Female, age 75, unknown 22.5
1821 Female, age 72, unknown 22.3
2769 Male, age 72, unknown 21.7
2823 Male, age 76, right hemisphere 21.2
2227 Male, age 72, unknown 21.1
1904 Male, age 53, unknown 20.4
2503 Female, age 72, unknown 18.7
1865 Male, age 51, unknown 17.7
2588 Male, age 74, left hemisphere 15.4
2584 Male, age 75, left hemisphere 14.7
2785 Male, age 18, unknown 14.7
Substantia nigra
nTPM: 23.1
2699 Male, age 18, unknown 33.1
2409 Female, age 72, unknown 30.1
1916 Female, age 42, unknown 23.2
2590 Female, age 75, unknown 22.4
2665 Male, age 74, both hemispheres 22.0
1889 Female, age 72, unknown 21.9
2241 Male, age 72, unknown 21.6
1851 Male, age 51, unknown 20.5
1941 Male, age 53, unknown 18.5
2583 Male, age 75, right hemisphere 18.2
Superior colliculus
nTPM: 21.6
1995 Male, age 72, unknown 27.9
2087 Female, age 72, unknown 24.5
2261 Male, age 18, unknown 24.3
2664 Male, age 75, both hemispheres 22.1
1913 Female, age 42, unknown 21.8
1796 Male, age 53, unknown 20.7
1839 Male, age 51, unknown 20.7
2587 Male, age 74, left hemisphere 20.7
1895 Male, age 76, right hemisphere 18.5
2668 Female, age 75, unknown 14.8
Ventral tegmental area
nTPM: 22.5
1942 Male, age 51, unknown 24.8
2223 Female, age 72, unknown 23.1
2218 Male, age 76, both hemispheres 22.3
1915 Female, age 42, unknown 21.7
2021 Male, age 53, unknown 21.7
2410 Female, age 72, unknown 21.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 20.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 20.5
Samples: 139

Max nTPM: 57.3
Min nTPM: 4.1
Std nTPM: 7.8
Median nTPM: 19.1
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 57.3
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 45.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 44.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 39.4
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 39.4
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 37.2
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 37.1
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 34.0
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 33.0
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 32.6
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 31.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 57.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 57.0
FF:10158-103A5 76 years, female 57.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 63.1
Pig sample Sample description nTPM
Midbrain
nTPM: 63.1
Samples: 4

Max nTPM: 79.9
Min nTPM: 42.6
Sample A Female 79.9
Sample B Female 65.2
Sample C Male 64.7
Sample D Male 42.6
Periaqueductal gray
nTPM: 61.5
Samples: 3

Max nTPM: 67.7
Min nTPM: 57.1
Sample B Female 67.7
Sample C Male 59.6
Sample D Male 57.1
Substantia nigra
nTPM: 62.1
Samples: 4

Max nTPM: 70.9
Min nTPM: 57.2
Sample A Female 61.2
Sample B Female 57.2
Sample C Male 58.9
Sample D Male 70.9
Superior colliculi
nTPM: 49.9
Samples: 4

Max nTPM: 56.9
Min nTPM: 33.0
Sample A Female 52.7
Sample B Female 33.0
Sample C Male 56.9
Sample D Male 56.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 17.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 17.2
Samples: 4

Max nTPM: 17.8
Min nTPM: 16.6
Sample A Male 17.6
Sample B Male 16.6
Sample C Female 17.8
Sample D Female 16.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
79762708 Antisense, RP_071204_04_D09, Mouse strain C57BL/6J (56 days, male) 0.4
68191216 Antisense, RP_041123_02_B05, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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