BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:37.7 nTPM
HPA:37.7 nTPM
GTEx:29.0 nTPM
FANTOM5:40.0 Scaled Tags Per Million
Pig:33.8 nTPM
Mouse:40.7 nTPM
Allen mouse:7.7 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA052439
Glial cells Not detected
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 37.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 37.1
2846 Female, age 79, unknown 38.1
1857 Female, age 85, left hemisphere 37.9
2481 Female, age 94, left hemisphere 37.9
1781 Male, age 74, unknown 37.0
2290 Female, age 72, unknown 36.7
2288 Male, age 75, left hemisphere 36.5
1854 Male, age 80, left hemisphere 36.4
2289 Male, age 61, right hemisphere 36.2
Claustrum
nTPM: 36.2
1956 Male, age 74, unknown 38.0
2196 Female, age 79, unknown 37.5
2198 Male, age 80, both hemispheres 36.4
2292 Female, age 85, both hemispheres 36.3
2568 Male, age 61, both hemispheres 36.1
2645 Female, age 72, unknown 35.6
2284 Female, age 91, both hemispheres 35.4
2392 Female, age 94, both hemispheres 35.3
2491 Male, age 75, both hemispheres 35.2
Globus pallidus, externus
nTPM: 37.0
1996 Male, age 80, right hemisphere 40.2
2772 Female, age 79, unknown 38.0
2395 Male, age 75, both hemispheres 36.9
2646 Male, age 61, right hemisphere 35.0
2567 Female, age 72, unknown 34.9
Globus pallidus, internus
nTPM: 37.7
2037 Male, age 80, right hemisphere 40.5
2287 Male, age 75, right hemisphere 38.7
2778 Female, age 91, both hemispheres 38.2
1818 Male, age 74, unknown 38.1
2111 Female, age 85, right hemisphere 36.4
2566 Female, age 72, unknown 36.2
2483 Female, age 94, right hemisphere 35.9
Nucleus accumbens
nTPM: 37.4
2391 Female, age 94, left hemisphere 38.9
2286 Male, age 75, left hemisphere 38.8
2698 Female, age 72, unknown 38.8
1806 Female, age 85, left hemisphere 37.5
1783 Male, age 74, unknown 37.1
1856 Female, age 91, right hemisphere 37.0
2732 Male, age 80, right hemisphere 35.7
2824 Male, age 61, right hemisphere 35.4
Nucleus basalis of Meynert
nTPM: 35.7
2821 Male, age 75, both hemispheres 36.6
2393 Male, age 80, right hemisphere 36.2
2484 Female, age 94, left hemisphere 35.6
2569 Male, age 61, both hemispheres 34.4
Nucleus of the diagonal band
nTPM: 36.0
1812 Female, age 91, both hemispheres 36.6
2029 Male, age 61, right hemisphere 36.2
2775 Male, age 80, right hemisphere 36.2
2195 Female, age 85, both hemispheres 35.8
1979 Male, age 74, unknown 35.1
Olfactory tubercle
nTPM: 36.3
1846 Male, age 80, right hemisphere 36.6
2856 Male, age 75, right hemisphere 36.4
2487 Female, age 94, left hemisphere 36.1
1998 Female, age 91, both hemispheres 35.9
Putamen
nTPM: 36.4
2482 Female, age 94, left hemisphere 37.9
1829 Male, age 74, unknown 37.7
1838 Male, age 80, right hemisphere 36.5
2466 Female, age 79, unknown 36.4
1937 Female, age 91, right hemisphere 36.2
2647 Male, age 75, left hemisphere 35.5
2489 Female, age 72, unknown 34.6
Septal nuclei
nTPM: 36.3
2629 Female, age 94, right hemisphere 38.9
2009 Female, age 91, both hemispheres 36.9
2031 Female, age 72, unknown 36.9
2059 Female, age 85, both hemispheres 36.2
1960 Male, age 74, unknown 35.6
2199 Male, age 80, right hemisphere 35.4
2394 Male, age 61, left hemisphere 34.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 29.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 26.7
Samples: 246

Max nTPM: 55.0
Min nTPM: 11.6
Std nTPM: 5.9
Median nTPM: 26.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 55.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 49.3
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 47.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 45.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 44.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 43.4
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 42.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 41.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 41.2
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 37.9
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 37.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 26.7
Samples: 246

Max nTPM: 65.7
Min nTPM: 11.5
Std nTPM: 6.8
Median nTPM: 26.0
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 65.7
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 55.0
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 50.7
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 49.2
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 45.7
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 41.4
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 41.3
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 41.1
GTEX-13FHP-0011-R6b-SM-5LZY6 50-59 years, male 39.9
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 39.8
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 38.7
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Brain - Putamen (basal ganglia)
Average nTPM: 29.0
Samples: 205

Max nTPM: 70.3
Min nTPM: 13.3
Std nTPM: 6.0
Median nTPM: 28.3
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 70.3
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 50.8
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 45.1
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 44.5
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 44.3
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 43.7
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 43.3
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 43.0
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 42.4
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 40.0
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 39.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 40.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 35.4
FF:10164-103B2 76 years, female 35.4
Globus pallidus
Scaled Tags Per Million: 40.0
FF:10161-103A8 76 years, female 47.7
FF:10175-103C4 60 years, female 32.3
Nucleus accumbens
Scaled Tags Per Million: 31.6
FF:10037-101F1 23-56 years, mixed 31.6
Putamen
Scaled Tags Per Million: 28.6
FF:10176-103C5 60 years, female 28.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 33.8
Pig sample Sample description nTPM
Caudate
nTPM: 33.8
Samples: 4

Max nTPM: 41.2
Min nTPM: 29.3
Sample A Female 29.4
Sample B Female 35.4
Sample C Male 41.2
Sample D Male 29.3
Putamen
nTPM: 31.4
Samples: 4

Max nTPM: 42.9
Min nTPM: 22.4
Sample A Female 22.4
Sample B Female 27.9
Sample C Male 42.9
Sample D Male 32.3
Septum
nTPM: 27.3
Samples: 4

Max nTPM: 33.3
Min nTPM: 24.2
Sample A Female 33.3
Sample B Female 27.2
Sample C Male 24.2
Sample D Male 24.6
Ventral pallidum
nTPM: 27.7
Samples: 4

Max nTPM: 35.4
Min nTPM: 18.4
Sample A Female 35.4
Sample B Female 29.3
Sample C Male 18.4
Sample D Male 27.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 40.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 39.8
Samples: 4

Max nTPM: 44.0
Min nTPM: 37.7
Sample A Male 39.0
Sample B Male 37.7
Sample C Female 44.0
Sample D Female 38.3
Septum
nTPM: 40.7
Samples: 4

Max nTPM: 45.5
Min nTPM: 38.3
Sample A Male 38.6
Sample B Male 45.5
Sample C Female 40.5
Sample D Female 38.3
Ventral forebrain
nTPM: 38.7
Samples: 4

Max nTPM: 40.0
Min nTPM: 38.2
Sample A Male 38.3
Sample B Male 40.0
Sample C Female 38.2
Sample D Female 38.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 7.7
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 7.2
68666595 Antisense, RP_050126_02_E11, Mouse strain C57BL/6J (56 days, male) 7.2
Pallidum
Expression energy: 7.7
68666595 Antisense, RP_050126_02_E11, Mouse strain C57BL/6J (56 days, male) 7.7

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The Human Protein Atlas

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