We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
SSR2
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • SSR2
TISSUE SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN OVARY
PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:158.7 nTPM
HPA:141.0 nTPM
GTEx:158.7 nTPM
FANTOM5:216.7 Scaled Tags Per Million

SMALL INTESTINE - Annotated protein expression
Pending normal tissue analysis

SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 141.0
overview
Male, age 65
Small intestine sample 232
nTPM: 136.7
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 151.6
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 135.4
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 140.2

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 158.7
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 158.7
Samples: 187

Max nTPM: 268.9
Min nTPM: 103.7
Std nTPM: 30.2
Median nTPM: 153.5
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 268.9
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 246.8
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 245.4
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 245.3
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 244.7
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 239.3
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 232.4
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 231.1
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 221.4
GTEX-14PK6-1626-SM-6871I 70-79 years, female 216.8
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 213.4
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 212.6
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 212.4
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 211.4
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 206.3
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 205.6
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 205.4
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 204.8
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 204.1
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 199.7
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 199.6
GTEX-YFCO-1326-SM-664NV 40-49 years, male 197.8
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 197.4
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 194.8
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 194.2
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 192.3
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 185.5
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 184.6
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 184.3
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 183.8
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 183.1
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 183.1
GTEX-111YS-1426-SM-5GID8 60-69 years, male 179.7
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 178.5
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 177.1
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 177.0
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 175.8
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 175.4
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 175.4
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 175.2
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 175.1
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 174.8
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 174.1
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 173.8
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 173.4
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 173.1
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 172.5
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 172.1
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 172.1
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 171.1
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 171.0
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 169.8
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 169.1
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 168.1
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 167.8
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 167.2
GTEX-144GM-1026-SM-79OKU 20-29 years, male 167.0
GTEX-183FY-1626-SM-793D8 20-29 years, male 166.2
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 165.8
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 165.4
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 164.5
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 164.4
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 164.3
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 164.3
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 164.3
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 163.9
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 162.8
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 162.6
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 162.2
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 161.2
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 161.0
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 160.5
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 159.9
GTEX-1122O-1326-SM-5H11F 60-69 years, female 159.7
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 159.5
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 159.5
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 159.2
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 158.5
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 158.4
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 158.4
GTEX-13O61-1326-SM-5KM31 60-69 years, male 158.2
GTEX-14PKU-1626-SM-6871C 40-49 years, female 158.0
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 157.1
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 157.0
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 156.9
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 156.8
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 156.0
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 155.3
GTEX-14PN3-2026-SM-68729 60-69 years, female 154.9
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 154.9
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 154.9
GTEX-13113-1226-SM-5EGHT 60-69 years, female 154.6
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 154.3
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 153.5
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 153.2
GTEX-1192X-2526-SM-59868 50-59 years, male 153.1
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 153.0
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 152.9
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 152.4
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 151.8
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 151.8
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 151.3
GTEX-1C475-1426-SM-793CH 40-49 years, female 151.0
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 150.8
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 150.6
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 150.0
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 149.8
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 149.6
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 149.3
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 149.3
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 149.1
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 148.8
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 148.6
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 148.5
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 147.9
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 147.5
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 147.3
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 147.1
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 146.8
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 146.3
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 146.1
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 146.1
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 146.0
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 145.6
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 145.2
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 145.2
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 144.2
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 144.2
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 143.5
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 143.3
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 143.2
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 143.2
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 142.5
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 142.2
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 141.9
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 141.7
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 140.8
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 140.0
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 139.9
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 139.5
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 139.3
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 139.2
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 138.8
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 138.7
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 138.6
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 138.6
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 137.9
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 137.6
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 137.0
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 135.5
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 135.4
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 135.3
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 134.1
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 133.8
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 133.0
GTEX-ZTSS-0926-SM-59865 40-49 years, male 132.8
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 132.4
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 132.4
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 132.3
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 131.9
GTEX-13111-1426-SM-5DUW3 50-59 years, male 131.7
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 131.3
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 131.0
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 129.5
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 127.7
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 127.6
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 127.4
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 127.3
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 126.1
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 123.7
GTEX-117YX-0326-SM-5GICL 50-59 years, male 123.2
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 122.3
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 121.4
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 120.3
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 119.5
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 119.4
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 117.9
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 115.3
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 112.9
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 110.7
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 109.6
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 109.1
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 109.1
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 109.1
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 108.1
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 106.8
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 103.7
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 216.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 216.7
FF:10024-101D6 15,40,85 years, mixed 216.7

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.