BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:0.4 nTPM
HPA:0.4 nTPM
GTEx:0.2 nTPM
FANTOM5:2.9 Scaled Tags Per Million
Pig:0.7 nTPM
Mouse:1.4 nTPM

CAUDATE - Antibody stainingi
Antibody HPA048373
Glial cells Not detected
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 0.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 0.4
2289 Male, age 61, right hemisphere 0.8
2846 Female, age 79, unknown 0.5
1781 Male, age 74, unknown 0.4
1857 Female, age 85, left hemisphere 0.4
2288 Male, age 75, left hemisphere 0.4
2290 Female, age 72, unknown 0.3
1854 Male, age 80, left hemisphere 0.2
2481 Female, age 94, left hemisphere 0.1
Claustrum
nTPM: 0.1
2645 Female, age 72, unknown 0.6
2491 Male, age 75, both hemispheres 0.2
1956 Male, age 74, unknown 0.0
2196 Female, age 79, unknown 0.0
2198 Male, age 80, both hemispheres 0.0
2284 Female, age 91, both hemispheres 0.0
2292 Female, age 85, both hemispheres 0.0
2392 Female, age 94, both hemispheres 0.0
2568 Male, age 61, both hemispheres 0.0
Globus pallidus, externus
nTPM: 0.0
1996 Male, age 80, right hemisphere 0.0
2395 Male, age 75, both hemispheres 0.0
2567 Female, age 72, unknown 0.0
2646 Male, age 61, right hemisphere 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 0.0
2483 Female, age 94, right hemisphere 0.1
1818 Male, age 74, unknown 0.0
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
2287 Male, age 75, right hemisphere 0.0
2566 Female, age 72, unknown 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 0.3
2824 Male, age 61, right hemisphere 0.7
1783 Male, age 74, unknown 0.5
1806 Female, age 85, left hemisphere 0.4
2286 Male, age 75, left hemisphere 0.3
2698 Female, age 72, unknown 0.3
1856 Female, age 91, right hemisphere 0.2
2732 Male, age 80, right hemisphere 0.1
2391 Female, age 94, left hemisphere 0.0
Nucleus basalis of Meynert
nTPM: 0.4
2484 Female, age 94, left hemisphere 0.7
2393 Male, age 80, right hemisphere 0.4
2821 Male, age 75, both hemispheres 0.3
2569 Male, age 61, both hemispheres 0.1
Nucleus of the diagonal band
nTPM: 0.2
1979 Male, age 74, unknown 0.6
2029 Male, age 61, right hemisphere 0.2
1812 Female, age 91, both hemispheres 0.1
2195 Female, age 85, both hemispheres 0.1
2775 Male, age 80, right hemisphere 0.0
Olfactory tubercle
nTPM: 0.1
1998 Female, age 91, both hemispheres 0.2
2856 Male, age 75, right hemisphere 0.2
2487 Female, age 94, left hemisphere 0.1
1846 Male, age 80, right hemisphere 0.0
Putamen
nTPM: 0.3
2466 Female, age 79, unknown 0.5
1838 Male, age 80, right hemisphere 0.4
1937 Female, age 91, right hemisphere 0.4
2489 Female, age 72, unknown 0.3
2482 Female, age 94, left hemisphere 0.2
1829 Male, age 74, unknown 0.1
2647 Male, age 75, left hemisphere 0.1
Septal nuclei
nTPM: 0.2
2009 Female, age 91, both hemispheres 0.5
1960 Male, age 74, unknown 0.3
2059 Female, age 85, both hemispheres 0.3
2199 Male, age 80, right hemisphere 0.2
2394 Male, age 61, left hemisphere 0.2
2629 Female, age 94, right hemisphere 0.2
2031 Female, age 72, unknown 0.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 0.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 0.2
Samples: 246

Max nTPM: 1.2
Min nTPM: 0.0
Std nTPM: 0.2
Median nTPM: 0.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 1.2
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 1.1
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 0.9
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 0.8
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 0.8
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 0.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 0.8
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 0.7
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 0.7
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 0.7
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 0.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 0.2
Samples: 246

Max nTPM: 1.5
Min nTPM: 0.0
Std nTPM: 0.2
Median nTPM: 0.1
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 1.5
GTEX-T5JC-0011-R6A-SM-D3L87 20-29 years, male 1.1
GTEX-1BAJH-0011-R6b-SM-7MXT2 70-79 years, male 0.9
GTEX-1LVA9-0011-R6a-SM-EYYWH 50-59 years, male 0.9
GTEX-1E1VI-0011-R6a-SM-9OSVJ 50-59 years, male 0.8
GTEX-1N2DW-0011-R6a-SM-EZ6MW 50-59 years, male 0.8
GTEX-12WSC-0011-R6b-SM-5LU99 50-59 years, male 0.7
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 0.7
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 0.7
GTEX-1B933-0011-R6b-SM-79OOQ 50-59 years, female 0.7
GTEX-1B8SF-0011-R6b-SM-7MXUD 60-69 years, male 0.7
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Brain - Putamen (basal ganglia)
Average nTPM: 0.1
Samples: 205

Max nTPM: 1.2
Min nTPM: 0.0
Std nTPM: 0.2
Median nTPM: 0.1
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 1.2
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 0.9
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 0.8
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 0.8
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 0.7
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 0.6
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 0.6
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 0.6
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 0.5
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 0.5
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 0.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 2.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 2.9
FF:10164-103B2 76 years, female 2.9
Globus pallidus
Scaled Tags Per Million: 0.9
FF:10161-103A8 76 years, female 1.8
FF:10175-103C4 60 years, female 0.0
Nucleus accumbens
Scaled Tags Per Million: 1.8
FF:10037-101F1 23-56 years, mixed 1.8
Putamen
Scaled Tags Per Million: 1.6
FF:10176-103C5 60 years, female 1.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 0.7
Pig sample Sample description nTPM
Caudate
nTPM: 0.7
Samples: 4

Max nTPM: 0.9
Min nTPM: 0.4
Sample A Female 0.9
Sample B Female 0.8
Sample C Male 0.8
Sample D Male 0.4
Putamen
nTPM: 0.3
Samples: 4

Max nTPM: 0.6
Min nTPM: 0.1
Sample A Female 0.1
Sample B Female 0.6
Sample C Male 0.4
Sample D Male 0.1
Septum
nTPM: 0.5
Samples: 4

Max nTPM: 0.8
Min nTPM: 0.2
Sample A Female 0.2
Sample B Female 0.5
Sample C Male 0.4
Sample D Male 0.8
Ventral pallidum
nTPM: 0.3
Samples: 4

Max nTPM: 0.4
Min nTPM: 0.3
Sample A Female 0.3
Sample B Female 0.3
Sample C Male 0.3
Sample D Male 0.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 1.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 1.4
Samples: 4

Max nTPM: 1.7
Min nTPM: 1.1
Sample A Male 1.3
Sample B Male 1.4
Sample C Female 1.7
Sample D Female 1.1
Septum
nTPM: 0.8
Samples: 4

Max nTPM: 0.9
Min nTPM: 0.7
Sample A Male 0.8
Sample B Male 0.9
Sample C Female 0.7
Sample D Female 0.9
Ventral forebrain
nTPM: 1.0
Samples: 4

Max nTPM: 1.2
Min nTPM: 0.9
Sample A Male 0.9
Sample B Male 1.0
Sample C Female 1.2
Sample D Female 0.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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