MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:12.8 nTPM
HPA:12.8 nTPM
GTEx:14.1 nTPM
FANTOM5:127.5 Scaled Tags Per Million
Pig:30.0 nTPM
Mouse:4.3 nTPM

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 12.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 12.6
2586 Male, age 75, left hemisphere 14.5
2411 Female, age 72, unknown 13.4
2828 Female, age 72, unknown 13.0
1830 Male, age 51, unknown 12.9
2019 Male, age 18, unknown 12.5
2666 Male, age 74, left hemisphere 12.4
1827 Male, age 72, unknown 12.3
1833 Male, age 53, unknown 12.2
1870 Female, age 42, unknown 11.7
2219 Male, age 76, both hemispheres 11.5
Dorsal raphe nucleus
nTPM: 11.3
2750 Male, age 76, both hemispheres 12.0
2047 Male, age 72, unknown 11.5
2016 Female, age 72, unknown 11.2
1828 Male, age 53, unknown 11.1
2298 Female, age 72, unknown 10.8
Inferior colliculus
nTPM: 12.2
1848 Female, age 42, unknown 13.7
2849 Male, age 72, unknown 12.2
1890 Male, age 53, unknown 11.4
2097 Female, age 72, unknown 11.4
Median raphe nucleus
nTPM: 12.3
2220 Male, age 76, midline 12.3
Pedunculopontine tegmental nucleus
nTPM: 12.7
1921 Female, age 85, both hemispheres 13.5
2338 Male, age 61, both hemispheres 12.7
2334 Male, age 80, both hemispheres 12.0
Periaquaductal grey, anterior
nTPM: 11.7
2502 Female, age 75, unknown 12.1
1795 Male, age 51, unknown 11.7
1947 Male, age 18, unknown 11.4
Periaquaductal grey, dorsal
nTPM: 11.6
1840 Male, age 53, unknown 12.1
2464 Female, age 72, unknown 11.8
2850 Male, age 76, both hemispheres 11.5
1831 Male, age 72, unknown 10.9
Periaquaductal grey, lateral
nTPM: 11.5
2053 Male, age 18, unknown 11.8
2140 Male, age 76, both hemispheres 11.7
2272 Male, age 74, both hemispheres 11.1
Pretectal area
nTPM: 11.6
2316 Male, age 76, right hemisphere 12.4
1817 Female, age 42, unknown 12.1
2407 Male, age 75, both hemispheres 12.1
2007 Male, age 72, unknown 12.0
1815 Male, age 53, unknown 11.8
2667 Female, age 75, unknown 11.6
1816 Male, age 51, unknown 11.5
2825 Male, age 18, unknown 11.5
2273 Male, age 74, both hemispheres 11.2
1944 Female, age 72, unknown 11.1
2224 Female, age 72, unknown 10.6
Red nucleus
nTPM: 12.8
1821 Female, age 72, unknown 14.5
2785 Male, age 18, unknown 14.3
2769 Male, age 72, unknown 13.8
2503 Female, age 72, unknown 13.2
1904 Male, age 53, unknown 12.6
2584 Male, age 75, left hemisphere 12.6
1865 Male, age 51, unknown 12.5
2588 Male, age 74, left hemisphere 12.4
2227 Male, age 72, unknown 12.3
1954 Female, age 42, unknown 12.2
2823 Male, age 76, right hemisphere 12.1
2725 Female, age 75, unknown 11.6
Substantia nigra
nTPM: 11.9
2409 Female, age 72, unknown 16.0
2590 Female, age 75, unknown 12.6
2665 Male, age 74, both hemispheres 11.9
2583 Male, age 75, right hemisphere 11.8
1889 Female, age 72, unknown 11.6
2241 Male, age 72, unknown 11.5
2699 Male, age 18, unknown 11.3
1916 Female, age 42, unknown 11.2
1941 Male, age 53, unknown 11.0
1851 Male, age 51, unknown 10.6
Superior colliculus
nTPM: 12.3
1796 Male, age 53, unknown 13.6
1895 Male, age 76, right hemisphere 13.3
1839 Male, age 51, unknown 12.7
1995 Male, age 72, unknown 12.4
2668 Female, age 75, unknown 12.2
2664 Male, age 75, both hemispheres 12.0
1913 Female, age 42, unknown 11.9
2261 Male, age 18, unknown 11.9
2087 Female, age 72, unknown 11.3
2587 Male, age 74, left hemisphere 11.3
Ventral tegmental area
nTPM: 12.8
1942 Male, age 51, unknown 13.9
2021 Male, age 53, unknown 13.1
2410 Female, age 72, unknown 13.1
1915 Female, age 42, unknown 13.0
2218 Male, age 76, both hemispheres 12.5
2223 Female, age 72, unknown 11.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 14.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 14.1
Samples: 139

Max nTPM: 35.9
Min nTPM: 4.7
Std nTPM: 5.8
Median nTPM: 12.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 35.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 31.5
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 30.1
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 29.7
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 27.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 27.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 25.8
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 25.6
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 24.4
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 24.2
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 23.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 127.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 127.5
FF:10158-103A5 76 years, female 127.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 30.0
Pig sample Sample description nTPM
Midbrain
nTPM: 26.7
Samples: 4

Max nTPM: 28.6
Min nTPM: 25.3
Sample A Female 26.1
Sample B Female 28.6
Sample C Male 26.6
Sample D Male 25.3
Periaqueductal gray
nTPM: 30.0
Samples: 3

Max nTPM: 30.6
Min nTPM: 29.3
Sample B Female 30.6
Sample C Male 30.0
Sample D Male 29.3
Substantia nigra
nTPM: 28.9
Samples: 4

Max nTPM: 32.3
Min nTPM: 23.0
Sample A Female 23.0
Sample B Female 32.3
Sample C Male 28.1
Sample D Male 32.0
Superior colliculi
nTPM: 27.0
Samples: 4

Max nTPM: 35.0
Min nTPM: 21.8
Sample A Female 21.8
Sample B Female 35.0
Sample C Male 25.7
Sample D Male 25.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 4.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 4.3
Samples: 4

Max nTPM: 4.9
Min nTPM: 3.8
Sample A Male 3.8
Sample B Male 4.7
Sample C Female 4.9
Sample D Female 3.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.