BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:50.7 nTPM
HPA:50.7 nTPM
GTEx:25.7 nTPM
FANTOM5:64.4 Scaled Tags Per Million
Pig:11.8 nTPM
Mouse:16.1 nTPM
Allen mouse:0.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA028866
Glial cells Not detected
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 50.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 39.7
2481 Female, age 94, left hemisphere 44.7
2289 Male, age 61, right hemisphere 43.3
1781 Male, age 74, unknown 40.6
2288 Male, age 75, left hemisphere 39.9
2290 Female, age 72, unknown 38.4
1854 Male, age 80, left hemisphere 37.8
1857 Female, age 85, left hemisphere 36.5
2846 Female, age 79, unknown 36.5
Claustrum
nTPM: 38.2
2196 Female, age 79, unknown 41.9
2292 Female, age 85, both hemispheres 40.4
2568 Male, age 61, both hemispheres 39.5
2491 Male, age 75, both hemispheres 37.6
2284 Female, age 91, both hemispheres 37.5
2198 Male, age 80, both hemispheres 37.4
1956 Male, age 74, unknown 37.0
2645 Female, age 72, unknown 36.7
2392 Female, age 94, both hemispheres 35.5
Globus pallidus, externus
nTPM: 50.7
2646 Male, age 61, right hemisphere 61.5
1996 Male, age 80, right hemisphere 53.9
2567 Female, age 72, unknown 52.6
2772 Female, age 79, unknown 46.4
2395 Male, age 75, both hemispheres 39.2
Globus pallidus, internus
nTPM: 49.0
2778 Female, age 91, both hemispheres 53.2
2037 Male, age 80, right hemisphere 50.8
2111 Female, age 85, right hemisphere 49.6
2566 Female, age 72, unknown 49.2
1818 Male, age 74, unknown 47.8
2483 Female, age 94, right hemisphere 47.4
2287 Male, age 75, right hemisphere 44.8
Nucleus accumbens
nTPM: 39.7
2732 Male, age 80, right hemisphere 44.2
2391 Female, age 94, left hemisphere 41.4
2698 Female, age 72, unknown 40.9
2286 Male, age 75, left hemisphere 40.5
2824 Male, age 61, right hemisphere 39.3
1806 Female, age 85, left hemisphere 38.9
1783 Male, age 74, unknown 38.8
1856 Female, age 91, right hemisphere 34.0
Nucleus basalis of Meynert
nTPM: 43.2
2569 Male, age 61, both hemispheres 60.7
2484 Female, age 94, left hemisphere 38.2
2821 Male, age 75, both hemispheres 38.0
2393 Male, age 80, right hemisphere 36.0
Nucleus of the diagonal band
nTPM: 35.2
1979 Male, age 74, unknown 39.1
2195 Female, age 85, both hemispheres 35.5
1812 Female, age 91, both hemispheres 34.1
2029 Male, age 61, right hemisphere 33.6
2775 Male, age 80, right hemisphere 33.6
Olfactory tubercle
nTPM: 34.9
2856 Male, age 75, right hemisphere 37.5
1846 Male, age 80, right hemisphere 34.6
1998 Female, age 91, both hemispheres 33.9
2487 Female, age 94, left hemisphere 33.7
Putamen
nTPM: 38.9
2647 Male, age 75, left hemisphere 42.6
2482 Female, age 94, left hemisphere 42.2
2489 Female, age 72, unknown 41.9
1829 Male, age 74, unknown 39.0
1937 Female, age 91, right hemisphere 36.7
2466 Female, age 79, unknown 36.3
1838 Male, age 80, right hemisphere 33.9
Septal nuclei
nTPM: 37.5
2394 Male, age 61, left hemisphere 42.5
2199 Male, age 80, right hemisphere 41.5
2059 Female, age 85, both hemispheres 41.4
1960 Male, age 74, unknown 35.1
2629 Female, age 94, right hemisphere 34.4
2009 Female, age 91, both hemispheres 34.0
2031 Female, age 72, unknown 33.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 25.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 24.3
Samples: 246

Max nTPM: 78.2
Min nTPM: 4.1
Std nTPM: 11.6
Median nTPM: 21.7
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 78.2
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 77.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 62.6
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 59.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 56.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 55.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 54.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 53.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 53.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 52.9
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 50.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 22.4
Samples: 246

Max nTPM: 82.6
Min nTPM: 4.7
Std nTPM: 12.0
Median nTPM: 19.0
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 82.6
GTEX-13QJC-0011-R6a-SM-5S2VI 60-69 years, female 66.4
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 65.5
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 65.3
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 62.9
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 61.1
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 57.2
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 56.3
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 48.3
GTEX-12WSM-0011-R6b-SM-5EQ6N 60-69 years, male 48.0
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 46.7
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Brain - Putamen (basal ganglia)
Average nTPM: 25.7
Samples: 205

Max nTPM: 81.0
Min nTPM: 4.4
Std nTPM: 12.5
Median nTPM: 23.4
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 81.0
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 72.4
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 65.5
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 60.9
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 56.6
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 54.8
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 53.5
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 52.0
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 50.0
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 49.7
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 49.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 64.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 48.7
FF:10164-103B2 76 years, female 48.7
Globus pallidus
Scaled Tags Per Million: 64.4
FF:10161-103A8 76 years, female 79.1
FF:10175-103C4 60 years, female 49.7
Nucleus accumbens
Scaled Tags Per Million: 23.1
FF:10037-101F1 23-56 years, mixed 23.1
Putamen
Scaled Tags Per Million: 33.9
FF:10176-103C5 60 years, female 33.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 11.8
Pig sample Sample description nTPM
Caudate
nTPM: 11.6
Samples: 4

Max nTPM: 15.1
Min nTPM: 8.4
Sample A Female 8.4
Sample B Female 15.1
Sample C Male 13.3
Sample D Male 9.6
Putamen
nTPM: 10.9
Samples: 4

Max nTPM: 12.0
Min nTPM: 9.3
Sample A Female 12.0
Sample B Female 9.3
Sample C Male 10.7
Sample D Male 11.7
Septum
nTPM: 11.8
Samples: 4

Max nTPM: 12.5
Min nTPM: 10.4
Sample A Female 10.4
Sample B Female 12.2
Sample C Male 12.5
Sample D Male 11.9
Ventral pallidum
nTPM: 11.2
Samples: 4

Max nTPM: 15.0
Min nTPM: 7.7
Sample A Female 7.7
Sample B Female 11.2
Sample C Male 15.0
Sample D Male 10.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 16.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 13.2
Samples: 4

Max nTPM: 15.4
Min nTPM: 10.8
Sample A Male 12.8
Sample B Male 15.4
Sample C Female 13.7
Sample D Female 10.8
Septum
nTPM: 16.1
Samples: 4

Max nTPM: 18.4
Min nTPM: 14.2
Sample A Male 14.2
Sample B Male 14.4
Sample C Female 18.4
Sample D Female 17.5
Ventral forebrain
nTPM: 12.5
Samples: 4

Max nTPM: 15.2
Min nTPM: 11.1
Sample A Male 12.7
Sample B Male 11.1
Sample C Female 15.2
Sample D Female 11.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
393192 Antisense, RP_040804_02_B12, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
393192 Antisense, RP_040804_02_B12, Mouse strain C57BL/6J (56 days, male) 0.0

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