MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:70.7 nTPM
HPA:70.7 nTPM
GTEx:51.5 nTPM
FANTOM5:10.9 Scaled Tags Per Million
Mouse:112.1 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 70.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 57.6
2586 Male, age 75, left hemisphere 82.3
2666 Male, age 74, left hemisphere 67.5
2019 Male, age 18, unknown 66.9
2219 Male, age 76, both hemispheres 61.1
2828 Female, age 72, unknown 59.3
1827 Male, age 72, unknown 53.2
1870 Female, age 42, unknown 50.3
1833 Male, age 53, unknown 48.4
1830 Male, age 51, unknown 44.4
2411 Female, age 72, unknown 42.2
Dorsal raphe nucleus
nTPM: 42.9
2047 Male, age 72, unknown 48.4
2750 Male, age 76, both hemispheres 47.8
1828 Male, age 53, unknown 44.2
2298 Female, age 72, unknown 42.7
2016 Female, age 72, unknown 31.6
Inferior colliculus
nTPM: 65.4
2849 Male, age 72, unknown 85.9
1848 Female, age 42, unknown 70.2
2097 Female, age 72, unknown 56.4
1890 Male, age 53, unknown 49.3
Median raphe nucleus
nTPM: 60.6
2220 Male, age 76, midline 60.6
Pedunculopontine tegmental nucleus
nTPM: 55.1
2334 Male, age 80, both hemispheres 68.9
1921 Female, age 85, both hemispheres 56.4
2338 Male, age 61, both hemispheres 40.0
Periaquaductal grey, anterior
nTPM: 70.7
2502 Female, age 75, unknown 98.6
1795 Male, age 51, unknown 59.1
1947 Male, age 18, unknown 54.5
Periaquaductal grey, dorsal
nTPM: 50.2
1840 Male, age 53, unknown 60.4
2464 Female, age 72, unknown 56.4
2850 Male, age 76, both hemispheres 46.4
1831 Male, age 72, unknown 37.7
Periaquaductal grey, lateral
nTPM: 34.8
2140 Male, age 76, both hemispheres 43.2
2053 Male, age 18, unknown 35.0
2272 Male, age 74, both hemispheres 26.3
Pretectal area
nTPM: 68.1
1817 Female, age 42, unknown 109.8
1944 Female, age 72, unknown 103.3
2007 Male, age 72, unknown 97.7
1816 Male, age 51, unknown 91.2
1815 Male, age 53, unknown 77.3
2667 Female, age 75, unknown 75.2
2825 Male, age 18, unknown 49.6
2224 Female, age 72, unknown 45.5
2407 Male, age 75, both hemispheres 38.3
2316 Male, age 76, right hemisphere 37.4
2273 Male, age 74, both hemispheres 23.7
Red nucleus
nTPM: 40.7
2785 Male, age 18, unknown 76.5
2584 Male, age 75, left hemisphere 62.5
2769 Male, age 72, unknown 41.9
1954 Female, age 42, unknown 41.4
2227 Male, age 72, unknown 41.2
2588 Male, age 74, left hemisphere 40.5
2823 Male, age 76, right hemisphere 34.4
1865 Male, age 51, unknown 34.2
2503 Female, age 72, unknown 34.0
1904 Male, age 53, unknown 31.7
1821 Female, age 72, unknown 31.5
2725 Female, age 75, unknown 19.0
Substantia nigra
nTPM: 43.2
1889 Female, age 72, unknown 81.9
2665 Male, age 74, both hemispheres 73.6
1941 Male, age 53, unknown 56.6
1916 Female, age 42, unknown 41.7
1851 Male, age 51, unknown 38.0
2583 Male, age 75, right hemisphere 32.9
2241 Male, age 72, unknown 27.4
2699 Male, age 18, unknown 27.1
2409 Female, age 72, unknown 26.8
2590 Female, age 75, unknown 26.1
Superior colliculus
nTPM: 62.2
2668 Female, age 75, unknown 98.1
2087 Female, age 72, unknown 79.8
2664 Male, age 75, both hemispheres 74.9
1895 Male, age 76, right hemisphere 67.3
1839 Male, age 51, unknown 60.7
2261 Male, age 18, unknown 56.5
1796 Male, age 53, unknown 51.4
1913 Female, age 42, unknown 45.6
2587 Male, age 74, left hemisphere 45.2
1995 Male, age 72, unknown 42.1
Ventral tegmental area
nTPM: 41.3
2218 Male, age 76, both hemispheres 52.9
1942 Male, age 51, unknown 46.9
1915 Female, age 42, unknown 41.3
2021 Male, age 53, unknown 38.6
2410 Female, age 72, unknown 37.4
2223 Female, age 72, unknown 30.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 51.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 51.5
Samples: 139

Max nTPM: 198.4
Min nTPM: 3.8
Std nTPM: 32.9
Median nTPM: 50.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 198.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 145.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 123.1
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 117.7
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 117.2
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 112.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 112.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 111.6
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 107.0
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 99.3
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 96.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 10.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 10.9
FF:10158-103A5 76 years, female 10.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 112.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 112.1
Samples: 4

Max nTPM: 127.9
Min nTPM: 103.4
Sample A Male 127.9
Sample B Male 112.8
Sample C Female 103.4
Sample D Female 104.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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