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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:97.6 nTPM
HPA:97.6 nTPM
GTEx:117.2 nTPM
FANTOM5:49.5 Scaled Tags Per Million
Pig:37.4 nTPM
Mouse:76.9 nTPM
Allen mouse:2.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 97.6
Sample id Sample description nTPM
Amygdala
nTPM: 86.9
2517 Female, age 94, left hemisphere 91.6
1987 Female, age 91, left hemisphere 87.1
2695 Female, age 67, right hemisphere 86.5
2514 Male, age 75, right hemisphere 84.9
2814 Male, age 76, right hemisphere 84.1
Basal amygdala
nTPM: 97.6
2243 Female, age 91, right hemisphere 102.6
2827 Female, age 67, right hemisphere 102.6
2685 Female, age 94, left hemisphere 99.8
2110 Male, age 80, left hemisphere 97.0
2609 Male, age 75, right hemisphere 96.0
1955 Male, age 76, both hemispheres 87.5
Central amygdala
nTPM: 90.2
2826 Female, age 94, left hemisphere 100.3
2239 Male, age 80, left hemisphere 95.2
2515 Male, age 75, right hemisphere 90.3
1905 Male, age 76, both hemispheres 83.8
2701 Female, age 91, right hemisphere 81.6
Corticomedial amygdala
nTPM: 94.5
2535 Female, age 67, right hemisphere 102.3
2829 Male, age 80, left hemisphere 101.3
2428 Male, age 75, right hemisphere 93.9
2242 Female, age 91, right hemisphere 93.4
2429 Female, age 94, left hemisphere 93.1
2240 Male, age 76, both hemispheres 83.4
Lateral amygdala
nTPM: 93.6
2534 Female, age 94, left hemisphere 100.9
2830 Female, age 67, right hemisphere 98.9
2256 Male, age 80, left hemisphere 92.4
2255 Female, age 91, right hemisphere 92.3
2516 Male, age 75, right hemisphere 90.3
1883 Male, age 76, both hemispheres 86.5
Stria terminalis, bed nucleus
nTPM: 90.4
2486 Female, age 94, both hemispheres 98.0
1974 Female, age 91, both hemispheres 96.1
2201 Male, age 74, unknown 77.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 117.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 117.2
Samples: 152

Max nTPM: 272.0
Min nTPM: 38.8
Std nTPM: 37.1
Median nTPM: 112.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 272.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 242.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 233.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 199.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 197.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 186.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 186.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 175.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 171.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 169.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 167.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 166.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 165.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 162.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 161.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 161.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 157.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 157.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 157.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 157.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 155.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 155.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 154.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 154.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 152.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 152.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 148.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 148.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 148.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 148.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 143.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 142.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 142.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 140.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 140.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 139.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 139.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 139.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 139.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 138.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 137.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 134.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 133.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 132.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 132.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 130.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 130.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 130.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 130.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 130.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 128.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 127.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 127.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 127.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 127.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 127.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 126.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 125.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 124.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 123.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 122.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 121.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 121.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 120.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 119.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 119.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 119.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 118.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 117.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 117.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 114.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 114.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 114.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 114.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 112.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 112.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 112.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 111.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 111.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 110.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 109.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 109.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 109.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 109.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 109.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 108.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 108.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 107.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 107.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 105.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 105.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 104.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 103.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 103.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 102.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 102.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 102.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 102.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 101.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 101.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 100.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 98.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 98.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 98.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 98.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 97.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 97.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 96.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 95.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 95.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 94.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 94.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 93.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 93.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 93.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 92.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 92.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 91.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 90.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 88.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 87.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 87.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 87.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 87.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 87.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 86.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 85.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 85.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 84.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 83.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 80.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 79.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 79.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 78.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 78.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 76.5
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 74.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 73.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 72.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 70.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 68.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 68.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 67.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 65.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 60.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 59.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 58.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 57.0
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 54.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 45.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 41.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 38.8
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 49.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 49.5
FF:10151-102I7 76 years, female 49.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 37.4
Pig sample Sample description nTPM
Amygdala
nTPM: 37.4
Samples: 4

Max nTPM: 47.4
Min nTPM: 30.4
Sample A Female 47.4
Sample B Female 30.4
Sample C Male 40.5
Sample D Male 31.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 76.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 76.9
Samples: 4

Max nTPM: 82.8
Min nTPM: 73.2
Sample A Male 73.2
Sample B Male 77.7
Sample C Female 82.8
Sample D Female 73.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 2.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 2.0
74881827 Antisense, RP_060315_04_D04, Mouse strain C57BL/6J (56 days, male) 2.9
69528082 Antisense, RP_050421_03_A10, Mouse strain C57BL/6J (56 days, male) 1.2

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