MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:85.7 nTPM
HPA:85.7 nTPM
GTEx:60.1 nTPM
FANTOM5:19.8 Scaled Tags Per Million
Pig:35.9 nTPM
Mouse:49.5 nTPM
Allen mouse:1.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 85.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 82.3
2586 Male, age 75, left hemisphere 97.3
2828 Female, age 72, unknown 84.9
1827 Male, age 72, unknown 84.6
2019 Male, age 18, unknown 84.6
2666 Male, age 74, left hemisphere 84.6
2219 Male, age 76, both hemispheres 80.6
2411 Female, age 72, unknown 78.3
1830 Male, age 51, unknown 76.2
1833 Male, age 53, unknown 76.0
1870 Female, age 42, unknown 75.8
Dorsal raphe nucleus
nTPM: 75.8
1828 Male, age 53, unknown 81.5
2016 Female, age 72, unknown 75.6
2047 Male, age 72, unknown 75.5
2298 Female, age 72, unknown 75.2
2750 Male, age 76, both hemispheres 71.1
Inferior colliculus
nTPM: 81.4
1890 Male, age 53, unknown 83.5
2097 Female, age 72, unknown 83.5
1848 Female, age 42, unknown 81.0
2849 Male, age 72, unknown 77.6
Median raphe nucleus
nTPM: 71.1
2220 Male, age 76, midline 71.1
Pedunculopontine tegmental nucleus
nTPM: 73.8
1921 Female, age 85, both hemispheres 76.3
2334 Male, age 80, both hemispheres 74.0
2338 Male, age 61, both hemispheres 71.0
Periaquaductal grey, anterior
nTPM: 85.7
2502 Female, age 75, unknown 88.2
1795 Male, age 51, unknown 85.0
1947 Male, age 18, unknown 84.0
Periaquaductal grey, dorsal
nTPM: 75.7
2464 Female, age 72, unknown 78.8
1831 Male, age 72, unknown 76.5
1840 Male, age 53, unknown 75.6
2850 Male, age 76, both hemispheres 72.0
Periaquaductal grey, lateral
nTPM: 74.7
2053 Male, age 18, unknown 76.4
2140 Male, age 76, both hemispheres 74.5
2272 Male, age 74, both hemispheres 73.2
Pretectal area
nTPM: 83.3
1816 Male, age 51, unknown 94.1
2007 Male, age 72, unknown 91.6
1817 Female, age 42, unknown 89.9
1944 Female, age 72, unknown 88.2
1815 Male, age 53, unknown 85.2
2407 Male, age 75, both hemispheres 83.4
2667 Female, age 75, unknown 81.0
2825 Male, age 18, unknown 77.0
2316 Male, age 76, right hemisphere 76.8
2273 Male, age 74, both hemispheres 75.1
2224 Female, age 72, unknown 73.6
Red nucleus
nTPM: 80.3
2588 Male, age 74, left hemisphere 85.7
2785 Male, age 18, unknown 84.2
2584 Male, age 75, left hemisphere 82.7
2227 Male, age 72, unknown 81.0
2769 Male, age 72, unknown 80.8
2503 Female, age 72, unknown 80.6
1954 Female, age 42, unknown 79.3
1821 Female, age 72, unknown 79.1
1904 Male, age 53, unknown 79.1
2725 Female, age 75, unknown 78.5
1865 Male, age 51, unknown 77.0
2823 Male, age 76, right hemisphere 75.5
Substantia nigra
nTPM: 84.3
1916 Female, age 42, unknown 89.4
2665 Male, age 74, both hemispheres 89.3
1851 Male, age 51, unknown 87.2
1889 Female, age 72, unknown 84.9
2583 Male, age 75, right hemisphere 84.4
2409 Female, age 72, unknown 83.8
1941 Male, age 53, unknown 82.9
2590 Female, age 75, unknown 81.5
2241 Male, age 72, unknown 79.9
2699 Male, age 18, unknown 79.3
Superior colliculus
nTPM: 82.9
2664 Male, age 75, both hemispheres 96.1
2087 Female, age 72, unknown 87.8
2668 Female, age 75, unknown 86.2
2261 Male, age 18, unknown 85.7
1796 Male, age 53, unknown 85.4
1839 Male, age 51, unknown 79.9
2587 Male, age 74, left hemisphere 78.3
1995 Male, age 72, unknown 77.6
1913 Female, age 42, unknown 76.8
1895 Male, age 76, right hemisphere 75.5
Ventral tegmental area
nTPM: 80.3
2410 Female, age 72, unknown 84.0
1915 Female, age 42, unknown 83.8
1942 Male, age 51, unknown 80.7
2218 Male, age 76, both hemispheres 79.5
2223 Female, age 72, unknown 78.8
2021 Male, age 53, unknown 75.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 60.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 60.1
Samples: 139

Max nTPM: 106.6
Min nTPM: 29.5
Std nTPM: 14.1
Median nTPM: 60.4
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 106.6
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 94.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 90.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 89.6
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 88.8
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 87.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 84.7
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 80.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 79.7
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 79.3
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 78.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 19.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 19.8
FF:10158-103A5 76 years, female 19.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 35.9
Pig sample Sample description nTPM
Midbrain
nTPM: 33.3
Samples: 4

Max nTPM: 46.1
Min nTPM: 26.7
Sample A Female 26.7
Sample B Female 27.0
Sample C Male 46.1
Sample D Male 33.4
Periaqueductal gray
nTPM: 25.3
Samples: 3

Max nTPM: 27.6
Min nTPM: 21.1
Sample B Female 27.3
Sample C Male 27.6
Sample D Male 21.1
Substantia nigra
nTPM: 29.4
Samples: 4

Max nTPM: 36.3
Min nTPM: 24.1
Sample A Female 36.3
Sample B Female 25.9
Sample C Male 31.2
Sample D Male 24.1
Superior colliculi
nTPM: 35.9
Samples: 4

Max nTPM: 42.1
Min nTPM: 28.3
Sample A Female 38.2
Sample B Female 28.3
Sample C Male 42.1
Sample D Male 34.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 49.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 49.5
Samples: 4

Max nTPM: 51.1
Min nTPM: 48.3
Sample A Male 51.1
Sample B Male 48.3
Sample C Female 49.1
Sample D Female 49.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.2
74881827 Antisense, RP_060315_04_D04, Mouse strain C57BL/6J (56 days, male) 1.3
69528082 Antisense, RP_050421_03_A10, Mouse strain C57BL/6J (56 days, male) 1.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.