MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:45.5 nTPM
HPA:45.5 nTPM
GTEx:35.1 nTPM
FANTOM5:27.4 Scaled Tags Per Million
Pig:15.1 nTPM
Mouse:48.9 nTPM
Allen mouse:4.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 45.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 44.4
2828 Female, age 72, unknown 46.2
1827 Male, age 72, unknown 46.0
2019 Male, age 18, unknown 45.3
1870 Female, age 42, unknown 45.1
2586 Male, age 75, left hemisphere 44.9
2411 Female, age 72, unknown 44.5
1833 Male, age 53, unknown 44.4
1830 Male, age 51, unknown 43.3
2219 Male, age 76, both hemispheres 42.7
2666 Male, age 74, left hemisphere 41.6
Dorsal raphe nucleus
nTPM: 45.3
2298 Female, age 72, unknown 48.4
2047 Male, age 72, unknown 44.8
2750 Male, age 76, both hemispheres 44.7
2016 Female, age 72, unknown 44.6
1828 Male, age 53, unknown 44.2
Inferior colliculus
nTPM: 44.1
2097 Female, age 72, unknown 45.7
1848 Female, age 42, unknown 44.5
1890 Male, age 53, unknown 44.3
2849 Male, age 72, unknown 41.9
Median raphe nucleus
nTPM: 44.1
2220 Male, age 76, midline 44.1
Pedunculopontine tegmental nucleus
nTPM: 43.9
1921 Female, age 85, both hemispheres 44.9
2334 Male, age 80, both hemispheres 44.9
2338 Male, age 61, both hemispheres 41.9
Periaquaductal grey, anterior
nTPM: 44.4
1795 Male, age 51, unknown 45.0
1947 Male, age 18, unknown 44.4
2502 Female, age 75, unknown 43.8
Periaquaductal grey, dorsal
nTPM: 42.3
2464 Female, age 72, unknown 43.3
1831 Male, age 72, unknown 42.3
1840 Male, age 53, unknown 41.9
2850 Male, age 76, both hemispheres 41.8
Periaquaductal grey, lateral
nTPM: 43.8
2272 Male, age 74, both hemispheres 47.0
2053 Male, age 18, unknown 43.2
2140 Male, age 76, both hemispheres 41.1
Pretectal area
nTPM: 44.7
2273 Male, age 74, both hemispheres 48.1
2667 Female, age 75, unknown 46.5
2007 Male, age 72, unknown 46.3
1817 Female, age 42, unknown 45.7
1815 Male, age 53, unknown 44.8
1816 Male, age 51, unknown 44.4
2825 Male, age 18, unknown 44.3
2224 Female, age 72, unknown 43.5
2407 Male, age 75, both hemispheres 43.1
1944 Female, age 72, unknown 43.0
2316 Male, age 76, right hemisphere 41.5
Red nucleus
nTPM: 45.5
2823 Male, age 76, right hemisphere 47.4
1904 Male, age 53, unknown 46.8
2227 Male, age 72, unknown 46.5
1821 Female, age 72, unknown 46.3
2769 Male, age 72, unknown 46.2
2725 Female, age 75, unknown 45.9
1954 Female, age 42, unknown 45.8
2785 Male, age 18, unknown 45.4
1865 Male, age 51, unknown 44.9
2503 Female, age 72, unknown 44.7
2588 Male, age 74, left hemisphere 43.4
2584 Male, age 75, left hemisphere 43.1
Substantia nigra
nTPM: 43.6
1889 Female, age 72, unknown 45.8
1916 Female, age 42, unknown 45.3
1851 Male, age 51, unknown 44.8
2583 Male, age 75, right hemisphere 44.8
2699 Male, age 18, unknown 44.2
1941 Male, age 53, unknown 43.8
2590 Female, age 75, unknown 42.4
2409 Female, age 72, unknown 42.0
2665 Male, age 74, both hemispheres 41.8
2241 Male, age 72, unknown 41.1
Superior colliculus
nTPM: 43.6
2587 Male, age 74, left hemisphere 45.4
1995 Male, age 72, unknown 44.4
1839 Male, age 51, unknown 44.1
1913 Female, age 42, unknown 44.1
1796 Male, age 53, unknown 43.9
1895 Male, age 76, right hemisphere 43.6
2087 Female, age 72, unknown 43.5
2668 Female, age 75, unknown 43.3
2261 Male, age 18, unknown 42.8
2664 Male, age 75, both hemispheres 41.1
Ventral tegmental area
nTPM: 45.1
2410 Female, age 72, unknown 48.4
1915 Female, age 42, unknown 44.9
1942 Male, age 51, unknown 44.4
2218 Male, age 76, both hemispheres 44.4
2223 Female, age 72, unknown 44.4
2021 Male, age 53, unknown 44.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 35.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 35.1
Samples: 139

Max nTPM: 60.1
Min nTPM: 23.1
Std nTPM: 6.6
Median nTPM: 34.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 60.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 56.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 52.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 52.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 49.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 47.8
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 47.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 47.4
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 47.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 46.9
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 46.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 27.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 27.4
FF:10158-103A5 76 years, female 27.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 15.1
Pig sample Sample description nTPM
Midbrain
nTPM: 13.5
Samples: 4

Max nTPM: 19.8
Min nTPM: 10.6
Sample A Female 19.8
Sample B Female 11.6
Sample C Male 11.9
Sample D Male 10.6
Periaqueductal gray
nTPM: 12.0
Samples: 3

Max nTPM: 13.8
Min nTPM: 10.5
Sample B Female 10.5
Sample C Male 13.8
Sample D Male 11.6
Substantia nigra
nTPM: 12.7
Samples: 4

Max nTPM: 14.5
Min nTPM: 11.4
Sample A Female 14.5
Sample B Female 12.7
Sample C Male 12.1
Sample D Male 11.4
Superior colliculi
nTPM: 15.1
Samples: 4

Max nTPM: 18.4
Min nTPM: 12.6
Sample A Female 16.7
Sample B Female 18.4
Sample C Male 12.6
Sample D Male 12.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 48.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 48.9
Samples: 4

Max nTPM: 51.9
Min nTPM: 44.2
Sample A Male 51.9
Sample B Male 44.2
Sample C Female 48.0
Sample D Female 51.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.0
77620381 Antisense, RP_070205_01_E02, Mouse strain C57BL/6J (56 days, male) 4.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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