MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:34.1 nTPM
HPA:34.1 nTPM
GTEx:28.9 nTPM
FANTOM5:93.6 Scaled Tags Per Million
Pig:42.0 nTPM
Mouse:67.1 nTPM
Allen mouse:0.8 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 34.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 31.7
2586 Male, age 75, left hemisphere 36.0
1827 Male, age 72, unknown 33.4
1870 Female, age 42, unknown 32.9
2666 Male, age 74, left hemisphere 32.5
2019 Male, age 18, unknown 31.6
2828 Female, age 72, unknown 31.5
2411 Female, age 72, unknown 31.3
1830 Male, age 51, unknown 29.6
1833 Male, age 53, unknown 29.5
2219 Male, age 76, both hemispheres 28.5
Dorsal raphe nucleus
nTPM: 29.9
2298 Female, age 72, unknown 32.9
2047 Male, age 72, unknown 30.1
1828 Male, age 53, unknown 29.6
2750 Male, age 76, both hemispheres 28.7
2016 Female, age 72, unknown 28.3
Inferior colliculus
nTPM: 34.1
2097 Female, age 72, unknown 37.1
2849 Male, age 72, unknown 34.0
1848 Female, age 42, unknown 32.8
1890 Male, age 53, unknown 32.6
Median raphe nucleus
nTPM: 28.1
2220 Male, age 76, midline 28.1
Pedunculopontine tegmental nucleus
nTPM: 29.1
1921 Female, age 85, both hemispheres 32.0
2334 Male, age 80, both hemispheres 29.6
2338 Male, age 61, both hemispheres 25.6
Periaquaductal grey, anterior
nTPM: 31.9
1947 Male, age 18, unknown 32.1
1795 Male, age 51, unknown 32.0
2502 Female, age 75, unknown 31.6
Periaquaductal grey, dorsal
nTPM: 31.7
1840 Male, age 53, unknown 36.9
2464 Female, age 72, unknown 31.9
2850 Male, age 76, both hemispheres 29.2
1831 Male, age 72, unknown 28.7
Periaquaductal grey, lateral
nTPM: 30.1
2053 Male, age 18, unknown 31.3
2140 Male, age 76, both hemispheres 30.1
2272 Male, age 74, both hemispheres 28.8
Pretectal area
nTPM: 32.6
2007 Male, age 72, unknown 35.6
1816 Male, age 51, unknown 35.3
1817 Female, age 42, unknown 34.7
1944 Female, age 72, unknown 33.3
2825 Male, age 18, unknown 33.2
2224 Female, age 72, unknown 32.8
2407 Male, age 75, both hemispheres 32.0
2316 Male, age 76, right hemisphere 31.5
2667 Female, age 75, unknown 30.8
1815 Male, age 53, unknown 29.9
2273 Male, age 74, both hemispheres 29.0
Red nucleus
nTPM: 29.7
2785 Male, age 18, unknown 32.3
2584 Male, age 75, left hemisphere 31.7
2588 Male, age 74, left hemisphere 31.1
1821 Female, age 72, unknown 30.8
2503 Female, age 72, unknown 30.4
2227 Male, age 72, unknown 30.3
2725 Female, age 75, unknown 30.1
2769 Male, age 72, unknown 29.6
1954 Female, age 42, unknown 28.6
1865 Male, age 51, unknown 28.2
1904 Male, age 53, unknown 27.9
2823 Male, age 76, right hemisphere 25.8
Substantia nigra
nTPM: 30.2
2583 Male, age 75, right hemisphere 34.1
2590 Female, age 75, unknown 32.0
2241 Male, age 72, unknown 31.6
1889 Female, age 72, unknown 31.3
2665 Male, age 74, both hemispheres 31.2
2409 Female, age 72, unknown 31.1
1941 Male, age 53, unknown 30.2
1851 Male, age 51, unknown 28.7
1916 Female, age 42, unknown 27.5
2699 Male, age 18, unknown 24.4
Superior colliculus
nTPM: 31.0
2664 Male, age 75, both hemispheres 33.5
1839 Male, age 51, unknown 33.2
2261 Male, age 18, unknown 32.9
1796 Male, age 53, unknown 32.3
2087 Female, age 72, unknown 31.6
1895 Male, age 76, right hemisphere 31.5
2668 Female, age 75, unknown 30.5
2587 Male, age 74, left hemisphere 29.5
1913 Female, age 42, unknown 27.8
1995 Male, age 72, unknown 27.4
Ventral tegmental area
nTPM: 29.7
2021 Male, age 53, unknown 31.6
2410 Female, age 72, unknown 30.3
1942 Male, age 51, unknown 30.0
1915 Female, age 42, unknown 29.4
2223 Female, age 72, unknown 29.3
2218 Male, age 76, both hemispheres 27.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 28.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 28.9
Samples: 139

Max nTPM: 50.9
Min nTPM: 15.5
Std nTPM: 4.7
Median nTPM: 28.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 50.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 47.3
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 43.8
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 41.6
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 41.1
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 40.7
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 40.1
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 39.2
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 37.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 37.7
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 34.5
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 93.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 93.6
FF:10158-103A5 76 years, female 93.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 42.0
Pig sample Sample description nTPM
Midbrain
nTPM: 42.0
Samples: 4

Max nTPM: 49.5
Min nTPM: 36.3
Sample A Female 42.8
Sample B Female 36.3
Sample C Male 49.5
Sample D Male 39.3
Periaqueductal gray
nTPM: 32.4
Samples: 3

Max nTPM: 34.0
Min nTPM: 29.4
Sample B Female 33.7
Sample C Male 34.0
Sample D Male 29.4
Substantia nigra
nTPM: 37.1
Samples: 4

Max nTPM: 41.9
Min nTPM: 34.2
Sample A Female 41.9
Sample B Female 34.2
Sample C Male 37.7
Sample D Male 34.6
Superior colliculi
nTPM: 39.9
Samples: 4

Max nTPM: 46.6
Min nTPM: 33.8
Sample A Female 40.9
Sample B Female 33.8
Sample C Male 46.6
Sample D Male 38.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 67.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 67.1
Samples: 4

Max nTPM: 73.2
Min nTPM: 61.8
Sample A Male 61.8
Sample B Male 68.1
Sample C Female 73.2
Sample D Female 65.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.8
71494623 Antisense, RP_050913_03_A01, Mouse strain C57BL/6J (56 days, male) 0.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.