BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:38.4 nTPM
HPA:38.4 nTPM
GTEx:56.7 nTPM
FANTOM5:65.8 Scaled Tags Per Million
Pig:2.9 nTPM
Mouse:7.5 nTPM

CAUDATE - Antibody stainingi
Antibody HPA003506Antibody HPA053314Antibody CAB037206
Glial cells HighNot detectedMedium
Neuronal cells Not detectedLowMedium







BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 38.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 38.4
2481 Female, age 94, left hemisphere 43.3
1781 Male, age 74, unknown 40.5
2289 Male, age 61, right hemisphere 38.1
2290 Female, age 72, unknown 37.4
2846 Female, age 79, unknown 37.1
1857 Female, age 85, left hemisphere 37.0
1854 Male, age 80, left hemisphere 36.7
2288 Male, age 75, left hemisphere 36.7
Claustrum
nTPM: 32.8
2196 Female, age 79, unknown 35.6
1956 Male, age 74, unknown 34.5
2292 Female, age 85, both hemispheres 33.3
2491 Male, age 75, both hemispheres 33.0
2198 Male, age 80, both hemispheres 32.4
2284 Female, age 91, both hemispheres 31.9
2568 Male, age 61, both hemispheres 31.9
2392 Female, age 94, both hemispheres 31.8
2645 Female, age 72, unknown 30.5
Globus pallidus, externus
nTPM: 37.6
2646 Male, age 61, right hemisphere 40.7
1996 Male, age 80, right hemisphere 40.3
2772 Female, age 79, unknown 37.0
2395 Male, age 75, both hemispheres 35.0
2567 Female, age 72, unknown 35.0
Globus pallidus, internus
nTPM: 37.4
2483 Female, age 94, right hemisphere 40.3
2778 Female, age 91, both hemispheres 38.5
2037 Male, age 80, right hemisphere 38.1
1818 Male, age 74, unknown 37.2
2287 Male, age 75, right hemisphere 36.7
2566 Female, age 72, unknown 35.8
2111 Female, age 85, right hemisphere 35.5
Nucleus accumbens
nTPM: 36.1
2391 Female, age 94, left hemisphere 39.4
2698 Female, age 72, unknown 37.6
1806 Female, age 85, left hemisphere 36.6
2286 Male, age 75, left hemisphere 36.6
2824 Male, age 61, right hemisphere 36.1
2732 Male, age 80, right hemisphere 35.6
1783 Male, age 74, unknown 33.7
1856 Female, age 91, right hemisphere 33.3
Nucleus basalis of Meynert
nTPM: 36.7
2569 Male, age 61, both hemispheres 41.1
2821 Male, age 75, both hemispheres 36.9
2393 Male, age 80, right hemisphere 35.1
2484 Female, age 94, left hemisphere 33.6
Nucleus of the diagonal band
nTPM: 32.4
1979 Male, age 74, unknown 34.3
1812 Female, age 91, both hemispheres 33.6
2195 Female, age 85, both hemispheres 32.8
2029 Male, age 61, right hemisphere 31.1
2775 Male, age 80, right hemisphere 30.4
Olfactory tubercle
nTPM: 33.2
2856 Male, age 75, right hemisphere 35.9
2487 Female, age 94, left hemisphere 33.0
1846 Male, age 80, right hemisphere 32.9
1998 Female, age 91, both hemispheres 31.0
Putamen
nTPM: 35.4
2482 Female, age 94, left hemisphere 38.2
2647 Male, age 75, left hemisphere 35.9
1937 Female, age 91, right hemisphere 35.3
2489 Female, age 72, unknown 35.3
1829 Male, age 74, unknown 35.2
1838 Male, age 80, right hemisphere 34.4
2466 Female, age 79, unknown 33.7
Septal nuclei
nTPM: 32.8
2629 Female, age 94, right hemisphere 35.6
2199 Male, age 80, right hemisphere 35.5
2009 Female, age 91, both hemispheres 32.6
2031 Female, age 72, unknown 31.8
2394 Male, age 61, left hemisphere 31.6
2059 Female, age 85, both hemispheres 31.3
1960 Male, age 74, unknown 31.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 56.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 56.7
Samples: 246

Max nTPM: 161.3
Min nTPM: 20.0
Std nTPM: 24.1
Median nTPM: 48.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 161.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 152.7
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 130.7
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 129.7
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 129.5
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 120.4
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 120.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 119.0
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 118.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 118.3
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 113.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 51.8
Samples: 246

Max nTPM: 214.9
Min nTPM: 19.7
Std nTPM: 28.9
Median nTPM: 41.6
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 214.9
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 214.7
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 148.3
GTEX-T5JC-0011-R6A-SM-D3L87 20-29 years, male 143.6
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 138.9
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 136.5
GTEX-1H1ZS-0011-R6b-SM-A9G1F 70-79 years, male 135.3
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 132.5
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 131.7
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 111.7
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 111.6
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Brain - Putamen (basal ganglia)
Average nTPM: 52.5
Samples: 205

Max nTPM: 179.6
Min nTPM: 23.7
Std nTPM: 26.0
Median nTPM: 44.1
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 179.6
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 167.7
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 157.1
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 156.0
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 145.5
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 142.0
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 119.1
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 117.9
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 114.2
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 109.6
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 108.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 65.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 65.8
FF:10164-103B2 76 years, female 65.8
Globus pallidus
Scaled Tags Per Million: 59.3
FF:10175-103C4 60 years, female 59.9
FF:10161-103A8 76 years, female 58.7
Nucleus accumbens
Scaled Tags Per Million: 42.5
FF:10037-101F1 23-56 years, mixed 42.5
Putamen
Scaled Tags Per Million: 54.8
FF:10176-103C5 60 years, female 54.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 2.9
Pig sample Sample description nTPM
Caudate
nTPM: 2.5
Samples: 4

Max nTPM: 2.8
Min nTPM: 2.1
Sample A Female 2.7
Sample B Female 2.8
Sample C Male 2.5
Sample D Male 2.1
Putamen
nTPM: 2.9
Samples: 4

Max nTPM: 4.1
Min nTPM: 2.1
Sample A Female 4.1
Sample B Female 2.1
Sample C Male 3.0
Sample D Male 2.5
Septum
nTPM: 2.5
Samples: 4

Max nTPM: 3.2
Min nTPM: 2.2
Sample A Female 3.2
Sample B Female 2.4
Sample C Male 2.2
Sample D Male 2.3
Ventral pallidum
nTPM: 2.3
Samples: 4

Max nTPM: 2.7
Min nTPM: 2.0
Sample A Female 2.1
Sample B Female 2.3
Sample C Male 2.0
Sample D Male 2.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 7.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 7.5
Samples: 4

Max nTPM: 8.3
Min nTPM: 6.6
Sample A Male 7.9
Sample B Male 6.6
Sample C Female 8.3
Sample D Female 7.3
Septum
nTPM: 6.4
Samples: 4

Max nTPM: 8.1
Min nTPM: 5.0
Sample A Male 5.0
Sample B Male 5.7
Sample C Female 6.7
Sample D Female 8.1
Ventral forebrain
nTPM: 4.0
Samples: 4

Max nTPM: 5.3
Min nTPM: 3.1
Sample A Male 3.1
Sample B Male 5.3
Sample C Female 4.0
Sample D Female 3.4

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