BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:81.2 nTPM
HPA:81.2 nTPM
GTEx:46.7 nTPM
FANTOM5:118.6 Scaled Tags Per Million
Pig:11.3 nTPM
Mouse:14.9 nTPM
Allen mouse:0.7 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 81.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 57.9
2481 Female, age 94, left hemisphere 83.1
1857 Female, age 85, left hemisphere 69.2
2288 Male, age 75, left hemisphere 61.5
2290 Female, age 72, unknown 57.2
2289 Male, age 61, right hemisphere 52.1
1854 Male, age 80, left hemisphere 50.6
1781 Male, age 74, unknown 47.4
2846 Female, age 79, unknown 42.4
Claustrum
nTPM: 40.6
2392 Female, age 94, both hemispheres 49.6
2491 Male, age 75, both hemispheres 47.2
1956 Male, age 74, unknown 44.6
2196 Female, age 79, unknown 40.5
2292 Female, age 85, both hemispheres 38.6
2198 Male, age 80, both hemispheres 37.4
2284 Female, age 91, both hemispheres 36.5
2568 Male, age 61, both hemispheres 36.5
2645 Female, age 72, unknown 34.6
Globus pallidus, externus
nTPM: 81.2
1996 Male, age 80, right hemisphere 105.8
2646 Male, age 61, right hemisphere 101.7
2772 Female, age 79, unknown 79.7
2567 Female, age 72, unknown 63.1
2395 Male, age 75, both hemispheres 55.7
Globus pallidus, internus
nTPM: 72.5
2483 Female, age 94, right hemisphere 90.3
1818 Male, age 74, unknown 83.7
2037 Male, age 80, right hemisphere 83.3
2778 Female, age 91, both hemispheres 71.3
2287 Male, age 75, right hemisphere 62.8
2111 Female, age 85, right hemisphere 62.1
2566 Female, age 72, unknown 53.9
Nucleus accumbens
nTPM: 53.4
1806 Female, age 85, left hemisphere 70.8
2286 Male, age 75, left hemisphere 63.4
2391 Female, age 94, left hemisphere 61.4
2732 Male, age 80, right hemisphere 48.8
2698 Female, age 72, unknown 48.7
1783 Male, age 74, unknown 46.9
2824 Male, age 61, right hemisphere 46.1
1856 Female, age 91, right hemisphere 41.0
Nucleus basalis of Meynert
nTPM: 63.7
2569 Male, age 61, both hemispheres 112.4
2484 Female, age 94, left hemisphere 52.4
2393 Male, age 80, right hemisphere 50.8
2821 Male, age 75, both hemispheres 39.4
Nucleus of the diagonal band
nTPM: 37.1
1979 Male, age 74, unknown 45.5
1812 Female, age 91, both hemispheres 36.0
2775 Male, age 80, right hemisphere 35.9
2195 Female, age 85, both hemispheres 35.8
2029 Male, age 61, right hemisphere 32.1
Olfactory tubercle
nTPM: 40.8
2856 Male, age 75, right hemisphere 48.2
1846 Male, age 80, right hemisphere 46.7
2487 Female, age 94, left hemisphere 34.8
1998 Female, age 91, both hemispheres 33.3
Putamen
nTPM: 52.4
1829 Male, age 74, unknown 60.8
2647 Male, age 75, left hemisphere 60.7
2482 Female, age 94, left hemisphere 58.9
2489 Female, age 72, unknown 54.0
1937 Female, age 91, right hemisphere 48.4
2466 Female, age 79, unknown 47.5
1838 Male, age 80, right hemisphere 36.8
Septal nuclei
nTPM: 42.6
2059 Female, age 85, both hemispheres 54.9
2199 Male, age 80, right hemisphere 54.6
2394 Male, age 61, left hemisphere 48.1
2009 Female, age 91, both hemispheres 38.1
2629 Female, age 94, right hemisphere 35.4
2031 Female, age 72, unknown 34.5
1960 Male, age 74, unknown 32.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 46.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 46.7
Samples: 246

Max nTPM: 102.1
Min nTPM: 10.5
Std nTPM: 18.1
Median nTPM: 43.5
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 102.1
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 101.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 96.8
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 96.6
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 93.0
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 92.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 89.5
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 85.6
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 84.9
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 84.9
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 84.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 39.3
Samples: 246

Max nTPM: 105.2
Min nTPM: 9.8
Std nTPM: 17.3
Median nTPM: 35.9
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 105.2
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 102.3
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 95.6
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 93.1
GTEX-S7PM-0011-R6A-SM-3NM8F 60-69 years, male 88.5
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 81.9
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 81.1
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 80.8
GTEX-13OVJ-0011-R6b-SM-5L3GH 50-59 years, female 79.1
GTEX-1IKOH-0011-R6b-SM-A9G1W 60-69 years, female 78.9
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 75.5
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Brain - Putamen (basal ganglia)
Average nTPM: 46.1
Samples: 205

Max nTPM: 105.2
Min nTPM: 13.0
Std nTPM: 18.1
Median nTPM: 43.2
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 105.2
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 96.4
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 92.4
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 91.1
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 89.5
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 83.2
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 82.6
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 81.6
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 81.2
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 81.1
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 81.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 118.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 118.6
FF:10164-103B2 76 years, female 118.6
Globus pallidus
Scaled Tags Per Million: 101.1
FF:10161-103A8 76 years, female 115.4
FF:10175-103C4 60 years, female 86.8
Nucleus accumbens
Scaled Tags Per Million: 100.2
FF:10037-101F1 23-56 years, mixed 100.2
Putamen
Scaled Tags Per Million: 100.8
FF:10176-103C5 60 years, female 100.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 11.3
Pig sample Sample description nTPM
Caudate
nTPM: 9.4
Samples: 4

Max nTPM: 10.1
Min nTPM: 8.4
Sample A Female 8.4
Sample B Female 10.0
Sample C Male 10.1
Sample D Male 8.9
Putamen
nTPM: 11.3
Samples: 4

Max nTPM: 13.1
Min nTPM: 9.4
Sample A Female 12.5
Sample B Female 9.4
Sample C Male 13.1
Sample D Male 10.1
Septum
nTPM: 9.8
Samples: 4

Max nTPM: 10.4
Min nTPM: 9.2
Sample A Female 9.2
Sample B Female 9.6
Sample C Male 10.0
Sample D Male 10.4
Ventral pallidum
nTPM: 10.7
Samples: 4

Max nTPM: 11.7
Min nTPM: 8.2
Sample A Female 8.2
Sample B Female 11.1
Sample C Male 11.7
Sample D Male 11.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 14.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 14.9
Samples: 4

Max nTPM: 16.8
Min nTPM: 13.4
Sample A Male 15.7
Sample B Male 13.4
Sample C Female 16.8
Sample D Female 13.8
Septum
nTPM: 14.7
Samples: 4

Max nTPM: 16.1
Min nTPM: 13.7
Sample A Male 13.7
Sample B Male 14.1
Sample C Female 14.7
Sample D Female 16.1
Ventral forebrain
nTPM: 12.6
Samples: 4

Max nTPM: 14.4
Min nTPM: 11.7
Sample A Male 14.4
Sample B Male 12.4
Sample C Female 11.7
Sample D Female 11.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.6
68797727 Antisense, RP_050215_01_A06, Mouse strain C57BL/6J (56 days, male) 1.0
74583162 Antisense, RP_051214_02_F10, Mouse strain C57BL/6J (56 days, male) 0.2
Pallidum
Expression energy: 0.7
68797727 Antisense, RP_050215_01_A06, Mouse strain C57BL/6J (56 days, male) 1.2
74583162 Antisense, RP_051214_02_F10, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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