MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:18.9 nTPM
HPA:18.9 nTPM
GTEx:24.9 nTPM
FANTOM5:6.0 Scaled Tags Per Million
Pig:66.5 nTPM
Mouse:77.3 nTPM

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 18.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 14.5
2666 Male, age 74, left hemisphere 20.6
2019 Male, age 18, unknown 20.1
1827 Male, age 72, unknown 17.2
2828 Female, age 72, unknown 16.4
2219 Male, age 76, both hemispheres 15.8
2411 Female, age 72, unknown 12.0
2586 Male, age 75, left hemisphere 10.8
1833 Male, age 53, unknown 10.7
1830 Male, age 51, unknown 10.5
1870 Female, age 42, unknown 10.5
Dorsal raphe nucleus
nTPM: 12.3
1828 Male, age 53, unknown 15.2
2298 Female, age 72, unknown 13.2
2047 Male, age 72, unknown 13.0
2750 Male, age 76, both hemispheres 11.3
2016 Female, age 72, unknown 8.8
Inferior colliculus
nTPM: 13.1
2097 Female, age 72, unknown 14.9
1848 Female, age 42, unknown 13.9
1890 Male, age 53, unknown 13.3
2849 Male, age 72, unknown 10.5
Median raphe nucleus
nTPM: 12.1
2220 Male, age 76, midline 12.1
Pedunculopontine tegmental nucleus
nTPM: 15.5
2334 Male, age 80, both hemispheres 17.5
1921 Female, age 85, both hemispheres 15.8
2338 Male, age 61, both hemispheres 13.3
Periaquaductal grey, anterior
nTPM: 15.0
1795 Male, age 51, unknown 16.0
1947 Male, age 18, unknown 15.4
2502 Female, age 75, unknown 13.7
Periaquaductal grey, dorsal
nTPM: 9.9
1831 Male, age 72, unknown 12.0
2464 Female, age 72, unknown 10.7
1840 Male, age 53, unknown 8.9
2850 Male, age 76, both hemispheres 8.1
Periaquaductal grey, lateral
nTPM: 8.6
2272 Male, age 74, both hemispheres 9.5
2053 Male, age 18, unknown 8.5
2140 Male, age 76, both hemispheres 7.8
Pretectal area
nTPM: 18.1
1944 Female, age 72, unknown 32.2
1816 Male, age 51, unknown 27.3
2007 Male, age 72, unknown 27.0
1817 Female, age 42, unknown 25.2
1815 Male, age 53, unknown 20.5
2667 Female, age 75, unknown 16.6
2407 Male, age 75, both hemispheres 12.4
2224 Female, age 72, unknown 10.2
2825 Male, age 18, unknown 9.5
2316 Male, age 76, right hemisphere 9.2
2273 Male, age 74, both hemispheres 8.6
Red nucleus
nTPM: 12.4
2785 Male, age 18, unknown 19.1
2584 Male, age 75, left hemisphere 13.6
1821 Female, age 72, unknown 13.4
1954 Female, age 42, unknown 13.3
2823 Male, age 76, right hemisphere 12.7
2588 Male, age 74, left hemisphere 12.0
2769 Male, age 72, unknown 11.8
2227 Male, age 72, unknown 11.7
1865 Male, age 51, unknown 11.3
1904 Male, age 53, unknown 10.9
2503 Female, age 72, unknown 10.4
2725 Female, age 75, unknown 8.6
Substantia nigra
nTPM: 18.9
2665 Male, age 74, both hemispheres 28.3
1916 Female, age 42, unknown 27.7
1941 Male, age 53, unknown 24.0
1889 Female, age 72, unknown 23.6
1851 Male, age 51, unknown 19.8
2409 Female, age 72, unknown 16.7
2583 Male, age 75, right hemisphere 13.0
2699 Male, age 18, unknown 12.4
2241 Male, age 72, unknown 12.2
2590 Female, age 75, unknown 11.3
Superior colliculus
nTPM: 16.7
2668 Female, age 75, unknown 37.4
2087 Female, age 72, unknown 27.5
1796 Male, age 53, unknown 15.9
2261 Male, age 18, unknown 15.8
1895 Male, age 76, right hemisphere 14.9
2664 Male, age 75, both hemispheres 13.3
1913 Female, age 42, unknown 11.7
1839 Male, age 51, unknown 11.4
1995 Male, age 72, unknown 10.6
2587 Male, age 74, left hemisphere 8.7
Ventral tegmental area
nTPM: 14.4
2410 Female, age 72, unknown 19.9
1915 Female, age 42, unknown 18.5
2218 Male, age 76, both hemispheres 18.0
1942 Male, age 51, unknown 12.9
2021 Male, age 53, unknown 9.4
2223 Female, age 72, unknown 7.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 24.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 24.9
Samples: 139

Max nTPM: 103.3
Min nTPM: 1.2
Std nTPM: 20.7
Median nTPM: 19.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 103.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 83.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 81.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 73.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 69.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 63.2
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 61.1
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 59.4
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 55.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 54.0
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 53.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 6.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 6.0
FF:10158-103A5 76 years, female 6.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 66.5
Pig sample Sample description nTPM
Midbrain
nTPM: 45.3
Samples: 4

Max nTPM: 96.0
Min nTPM: 7.9
Sample A Female 7.9
Sample B Female 27.2
Sample C Male 96.0
Sample D Male 50.0
Periaqueductal gray
nTPM: 22.0
Samples: 3

Max nTPM: 27.4
Min nTPM: 15.4
Sample B Female 23.1
Sample C Male 27.4
Sample D Male 15.4
Substantia nigra
nTPM: 31.7
Samples: 4

Max nTPM: 46.6
Min nTPM: 17.8
Sample A Female 46.6
Sample B Female 19.6
Sample C Male 42.8
Sample D Male 17.8
Superior colliculi
nTPM: 66.5
Samples: 4

Max nTPM: 104.3
Min nTPM: 34.4
Sample A Female 68.8
Sample B Female 34.4
Sample C Male 104.3
Sample D Male 58.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 77.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 77.4
Samples: 4

Max nTPM: 89.1
Min nTPM: 70.2
Sample A Male 89.1
Sample B Male 71.5
Sample C Female 70.2
Sample D Female 78.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.