BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:47.6 nTPM
HPA:47.6 nTPM
GTEx:79.9 nTPM
FANTOM5:114.5 Scaled Tags Per Million
Pig:45.6 nTPM
Mouse:87.4 nTPM
Allen mouse:0.8 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA023296Antibody HPA053675
Glial cells HighMedium
Neuronal cells Not detectedNot detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 47.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 47.1
2481 Female, age 94, left hemisphere 62.0
2290 Female, age 72, unknown 50.7
1857 Female, age 85, left hemisphere 48.6
2289 Male, age 61, right hemisphere 47.8
2288 Male, age 75, left hemisphere 45.5
1854 Male, age 80, left hemisphere 44.1
2846 Female, age 79, unknown 40.4
1781 Male, age 74, unknown 38.0
Claustrum
nTPM: 35.8
2392 Female, age 94, both hemispheres 39.3
2196 Female, age 79, unknown 38.0
1956 Male, age 74, unknown 37.7
2491 Male, age 75, both hemispheres 37.2
2198 Male, age 80, both hemispheres 37.0
2568 Male, age 61, both hemispheres 36.9
2292 Female, age 85, both hemispheres 32.7
2284 Female, age 91, both hemispheres 32.0
2645 Female, age 72, unknown 31.7
Globus pallidus, externus
nTPM: 47.6
2646 Male, age 61, right hemisphere 59.5
1996 Male, age 80, right hemisphere 54.0
2772 Female, age 79, unknown 45.1
2395 Male, age 75, both hemispheres 41.6
2567 Female, age 72, unknown 37.8
Globus pallidus, internus
nTPM: 42.9
2483 Female, age 94, right hemisphere 52.1
2037 Male, age 80, right hemisphere 45.1
2287 Male, age 75, right hemisphere 43.6
1818 Male, age 74, unknown 43.1
2778 Female, age 91, both hemispheres 42.1
2111 Female, age 85, right hemisphere 38.3
2566 Female, age 72, unknown 36.1
Nucleus accumbens
nTPM: 42.4
2391 Female, age 94, left hemisphere 48.0
1806 Female, age 85, left hemisphere 45.7
2286 Male, age 75, left hemisphere 43.9
2824 Male, age 61, right hemisphere 43.5
2698 Female, age 72, unknown 41.7
1783 Male, age 74, unknown 39.8
2732 Male, age 80, right hemisphere 38.8
1856 Female, age 91, right hemisphere 37.5
Nucleus basalis of Meynert
nTPM: 47.3
2569 Male, age 61, both hemispheres 64.7
2393 Male, age 80, right hemisphere 42.9
2484 Female, age 94, left hemisphere 42.1
2821 Male, age 75, both hemispheres 39.3
Nucleus of the diagonal band
nTPM: 34.9
1979 Male, age 74, unknown 38.7
1812 Female, age 91, both hemispheres 35.3
2775 Male, age 80, right hemisphere 33.8
2029 Male, age 61, right hemisphere 33.4
2195 Female, age 85, both hemispheres 33.3
Olfactory tubercle
nTPM: 36.8
1846 Male, age 80, right hemisphere 41.3
2856 Male, age 75, right hemisphere 40.0
1998 Female, age 91, both hemispheres 33.6
2487 Female, age 94, left hemisphere 32.5
Putamen
nTPM: 41.9
2482 Female, age 94, left hemisphere 47.7
1829 Male, age 74, unknown 44.4
2489 Female, age 72, unknown 43.3
2647 Male, age 75, left hemisphere 41.0
2466 Female, age 79, unknown 39.2
1937 Female, age 91, right hemisphere 39.0
1838 Male, age 80, right hemisphere 38.6
Septal nuclei
nTPM: 37.0
2059 Female, age 85, both hemispheres 42.6
2199 Male, age 80, right hemisphere 42.1
1960 Male, age 74, unknown 35.2
2394 Male, age 61, left hemisphere 35.0
2009 Female, age 91, both hemispheres 34.9
2629 Female, age 94, right hemisphere 34.9
2031 Female, age 72, unknown 34.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 79.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 78.5
Samples: 246

Max nTPM: 204.8
Min nTPM: 10.4
Std nTPM: 33.9
Median nTPM: 74.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 204.8
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 198.7
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 193.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 171.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 171.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 169.8
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 157.6
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 155.0
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 151.1
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 151.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 148.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 58.3
Samples: 246

Max nTPM: 210.3
Min nTPM: 12.6
Std nTPM: 28.9
Median nTPM: 53.4
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 210.3
GTEX-13OVJ-0011-R6b-SM-5L3GH 50-59 years, female 164.4
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 153.4
GTEX-1IKOH-0011-R6b-SM-A9G1W 60-69 years, female 132.0
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 129.0
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 126.5
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 126.2
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 118.7
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 118.4
GTEX-1192X-0011-R6a-SM-DNZZB 50-59 years, male 115.7
GTEX-ZVT3-0011-R6a-SM-51MSU 60-69 years, female 115.4
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Brain - Putamen (basal ganglia)
Average nTPM: 79.9
Samples: 205

Max nTPM: 285.8
Min nTPM: 9.9
Std nTPM: 41.7
Median nTPM: 69.5
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 285.8
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 221.2
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 194.5
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 185.7
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 181.0
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 177.1
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 172.9
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 172.8
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 172.2
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 170.3
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 159.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 114.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 114.5
FF:10164-103B2 76 years, female 114.5
Globus pallidus
Scaled Tags Per Million: 97.1
FF:10161-103A8 76 years, female 113.8
FF:10175-103C4 60 years, female 80.5
Nucleus accumbens
Scaled Tags Per Million: 71.4
FF:10037-101F1 23-56 years, mixed 71.4
Putamen
Scaled Tags Per Million: 84.3
FF:10176-103C5 60 years, female 84.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 45.6
Pig sample Sample description nTPM
Caudate
nTPM: 37.4
Samples: 4

Max nTPM: 40.7
Min nTPM: 31.8
Sample A Female 38.2
Sample B Female 39.0
Sample C Male 40.7
Sample D Male 31.8
Putamen
nTPM: 45.6
Samples: 4

Max nTPM: 61.9
Min nTPM: 36.4
Sample A Female 61.9
Sample B Female 36.5
Sample C Male 47.5
Sample D Male 36.4
Septum
nTPM: 45.3
Samples: 4

Max nTPM: 51.5
Min nTPM: 40.2
Sample A Female 51.5
Sample B Female 41.9
Sample C Male 47.7
Sample D Male 40.2
Ventral pallidum
nTPM: 41.0
Samples: 4

Max nTPM: 45.7
Min nTPM: 35.8
Sample A Female 39.9
Sample B Female 42.5
Sample C Male 45.7
Sample D Male 35.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 87.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 87.4
Samples: 4

Max nTPM: 95.3
Min nTPM: 82.7
Sample A Male 82.7
Sample B Male 88.6
Sample C Female 82.9
Sample D Female 95.3
Septum
nTPM: 84.8
Samples: 4

Max nTPM: 92.6
Min nTPM: 78.5
Sample A Male 78.5
Sample B Male 92.6
Sample C Female 84.0
Sample D Female 83.9
Ventral forebrain
nTPM: 83.7
Samples: 4

Max nTPM: 91.0
Min nTPM: 76.9
Sample A Male 76.9
Sample B Male 86.3
Sample C Female 91.0
Sample D Female 80.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.8
68193021 Antisense, RP_040825_01_A10, Mouse strain C57BL/6J (56 days, male) 0.8
Pallidum
Expression energy: 0.6
68193021 Antisense, RP_040825_01_A10, Mouse strain C57BL/6J (56 days, male) 0.6

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