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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:246.2 nTPM
HPA:246.2 nTPM
GTEx:353.7 nTPM
FANTOM5:481.9 Scaled Tags Per Million
Pig:450.7 nTPM
Mouse:728.0 nTPM
Allen mouse:19.1 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 246.2
Sample id Sample description nTPM
Amygdala
nTPM: 180.3
2814 Male, age 76, right hemisphere 244.8
1987 Female, age 91, left hemisphere 189.0
2517 Female, age 94, left hemisphere 178.3
2514 Male, age 75, right hemisphere 174.9
2695 Female, age 67, right hemisphere 114.4
Basal amygdala
nTPM: 223.8
2243 Female, age 91, right hemisphere 352.9
2110 Male, age 80, left hemisphere 289.8
2685 Female, age 94, left hemisphere 228.8
1955 Male, age 76, both hemispheres 199.0
2609 Male, age 75, right hemisphere 152.9
2827 Female, age 67, right hemisphere 119.8
Central amygdala
nTPM: 175.1
1905 Male, age 76, both hemispheres 218.4
2239 Male, age 80, left hemisphere 210.0
2826 Female, age 94, left hemisphere 153.9
2701 Female, age 91, right hemisphere 149.7
2515 Male, age 75, right hemisphere 143.8
Corticomedial amygdala
nTPM: 240.1
2829 Male, age 80, left hemisphere 361.5
2242 Female, age 91, right hemisphere 319.7
2240 Male, age 76, both hemispheres 225.8
2429 Female, age 94, left hemisphere 217.8
2428 Male, age 75, right hemisphere 161.4
2535 Female, age 67, right hemisphere 154.3
Lateral amygdala
nTPM: 147.7
1883 Male, age 76, both hemispheres 226.6
2534 Female, age 94, left hemisphere 173.9
2516 Male, age 75, right hemisphere 136.0
2256 Male, age 80, left hemisphere 132.0
2255 Female, age 91, right hemisphere 129.3
2830 Female, age 67, right hemisphere 88.6
Stria terminalis, bed nucleus
nTPM: 246.2
1974 Female, age 91, both hemispheres 325.1
2486 Female, age 94, both hemispheres 281.3
2201 Male, age 74, unknown 132.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 353.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 353.7
Samples: 152

Max nTPM: 939.0
Min nTPM: 111.7
Std nTPM: 153.3
Median nTPM: 331.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 939.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 815.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 808.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 762.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 740.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 726.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 672.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 660.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 643.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 616.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 614.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 596.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 591.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 587.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 561.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 558.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 548.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 538.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 536.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 529.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 522.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 520.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 518.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 508.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 508.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 492.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 492.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 483.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 476.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 472.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 468.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 458.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 456.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 434.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 433.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 433.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 430.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 425.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 418.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 417.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 415.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 408.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 408.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 403.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 401.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 395.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 388.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 383.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 383.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 383.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 381.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 381.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 381.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 380.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 379.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 376.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 373.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 370.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 369.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 367.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 363.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 352.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 350.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 350.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 348.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 347.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 347.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 344.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 343.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 342.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 342.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 338.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 335.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 332.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 332.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 331.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 330.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 329.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 327.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 325.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 321.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 318.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 317.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 312.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 307.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 302.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 302.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 301.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 299.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 295.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 293.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 292.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 289.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 288.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 287.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 281.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 281.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 273.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 271.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 268.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 263.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 263.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 263.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 262.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 258.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 256.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 254.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 254.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 253.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 252.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 251.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 249.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 247.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 243.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 243.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 237.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 229.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 227.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 227.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 224.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 223.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 221.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 220.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 218.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 214.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 208.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 208.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 206.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 204.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 202.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 202.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 196.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 194.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 190.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 190.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 189.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 188.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 184.7
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 181.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 181.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 179.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 175.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 173.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 172.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 169.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 168.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 167.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 161.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 153.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 151.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 117.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 111.7
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 481.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 481.9
FF:10151-102I7 76 years, female 481.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 450.7
Pig sample Sample description nTPM
Amygdala
nTPM: 450.7
Samples: 4

Max nTPM: 644.5
Min nTPM: 332.8
Sample A Female 644.5
Sample B Female 332.8
Sample C Male 385.6
Sample D Male 440.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 728.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 728.0
Samples: 4

Max nTPM: 796.4
Min nTPM: 633.9
Sample A Male 796.4
Sample B Male 749.8
Sample C Female 633.9
Sample D Female 731.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 19.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 19.1
1134 Antisense, RP_Baylor_103130, Mouse strain C57BL/6J (56 days, male) 19.1
1133 Antisense, RP_Baylor_103130, Mouse strain C57BL/6J (56 days, male) 18.7

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