MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:34.8 nTPM
HPA:34.8 nTPM
GTEx:33.7 nTPM
FANTOM5:117.0 Scaled Tags Per Million
Pig:42.4 nTPM
Mouse:24.7 nTPM
Allen mouse:6.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 34.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 33.9
1870 Female, age 42, unknown 37.4
2411 Female, age 72, unknown 35.7
1830 Male, age 51, unknown 35.3
1827 Male, age 72, unknown 34.9
2219 Male, age 76, both hemispheres 34.4
2019 Male, age 18, unknown 34.1
1833 Male, age 53, unknown 33.5
2828 Female, age 72, unknown 32.5
2666 Male, age 74, left hemisphere 31.5
2586 Male, age 75, left hemisphere 30.0
Dorsal raphe nucleus
nTPM: 32.5
2750 Male, age 76, both hemispheres 33.4
2047 Male, age 72, unknown 33.2
1828 Male, age 53, unknown 32.2
2298 Female, age 72, unknown 32.0
2016 Female, age 72, unknown 31.6
Inferior colliculus
nTPM: 32.2
1890 Male, age 53, unknown 32.4
2849 Male, age 72, unknown 32.4
2097 Female, age 72, unknown 32.3
1848 Female, age 42, unknown 31.6
Median raphe nucleus
nTPM: 33.8
2220 Male, age 76, midline 33.8
Pedunculopontine tegmental nucleus
nTPM: 34.7
2334 Male, age 80, both hemispheres 35.6
1921 Female, age 85, both hemispheres 34.3
2338 Male, age 61, both hemispheres 34.3
Periaquaductal grey, anterior
nTPM: 31.8
1947 Male, age 18, unknown 33.2
2502 Female, age 75, unknown 32.9
1795 Male, age 51, unknown 29.3
Periaquaductal grey, dorsal
nTPM: 30.7
1840 Male, age 53, unknown 31.4
2464 Female, age 72, unknown 30.9
1831 Male, age 72, unknown 30.5
2850 Male, age 76, both hemispheres 30.0
Periaquaductal grey, lateral
nTPM: 30.2
2053 Male, age 18, unknown 32.8
2140 Male, age 76, both hemispheres 29.5
2272 Male, age 74, both hemispheres 28.2
Pretectal area
nTPM: 32.6
1944 Female, age 72, unknown 34.4
1815 Male, age 53, unknown 33.9
2007 Male, age 72, unknown 33.7
1817 Female, age 42, unknown 33.6
1816 Male, age 51, unknown 32.6
2825 Male, age 18, unknown 32.5
2667 Female, age 75, unknown 32.4
2407 Male, age 75, both hemispheres 32.3
2224 Female, age 72, unknown 31.7
2273 Male, age 74, both hemispheres 31.2
2316 Male, age 76, right hemisphere 30.5
Red nucleus
nTPM: 34.3
1821 Female, age 72, unknown 37.7
1954 Female, age 42, unknown 37.6
1865 Male, age 51, unknown 36.2
2503 Female, age 72, unknown 36.1
1904 Male, age 53, unknown 34.2
2725 Female, age 75, unknown 34.2
2823 Male, age 76, right hemisphere 34.0
2588 Male, age 74, left hemisphere 33.4
2769 Male, age 72, unknown 33.2
2227 Male, age 72, unknown 32.1
2785 Male, age 18, unknown 31.9
2584 Male, age 75, left hemisphere 31.4
Substantia nigra
nTPM: 34.8
1916 Female, age 42, unknown 37.3
2409 Female, age 72, unknown 36.4
2241 Male, age 72, unknown 36.1
1851 Male, age 51, unknown 35.7
1889 Female, age 72, unknown 35.6
1941 Male, age 53, unknown 34.8
2665 Male, age 74, both hemispheres 34.7
2699 Male, age 18, unknown 33.2
2583 Male, age 75, right hemisphere 32.5
2590 Female, age 75, unknown 32.2
Superior colliculus
nTPM: 32.5
1895 Male, age 76, right hemisphere 35.0
2668 Female, age 75, unknown 34.1
2587 Male, age 74, left hemisphere 33.7
1913 Female, age 42, unknown 33.4
1796 Male, age 53, unknown 32.2
2261 Male, age 18, unknown 31.9
1839 Male, age 51, unknown 31.8
1995 Male, age 72, unknown 31.6
2087 Female, age 72, unknown 30.9
2664 Male, age 75, both hemispheres 30.7
Ventral tegmental area
nTPM: 33.5
1915 Female, age 42, unknown 35.2
2410 Female, age 72, unknown 34.4
2218 Male, age 76, both hemispheres 33.5
1942 Male, age 51, unknown 32.9
2223 Female, age 72, unknown 32.9
2021 Male, age 53, unknown 32.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 33.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 33.7
Samples: 139

Max nTPM: 95.7
Min nTPM: 15.6
Std nTPM: 11.6
Median nTPM: 31.2
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 95.7
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 92.4
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 81.7
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 68.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 56.4
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 52.8
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 50.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 49.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 48.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 48.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 47.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 117.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 117.0
FF:10158-103A5 76 years, female 117.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 42.4
Pig sample Sample description nTPM
Midbrain
nTPM: 42.4
Samples: 4

Max nTPM: 58.9
Min nTPM: 30.1
Sample A Female 58.9
Sample B Female 37.2
Sample C Male 43.4
Sample D Male 30.1
Periaqueductal gray
nTPM: 34.7
Samples: 3

Max nTPM: 35.7
Min nTPM: 33.0
Sample B Female 35.5
Sample C Male 35.7
Sample D Male 33.0
Substantia nigra
nTPM: 34.9
Samples: 4

Max nTPM: 38.4
Min nTPM: 27.8
Sample A Female 38.4
Sample B Female 27.8
Sample C Male 37.6
Sample D Male 35.7
Superior colliculi
nTPM: 30.5
Samples: 4

Max nTPM: 39.6
Min nTPM: 19.1
Sample A Female 29.5
Sample B Female 19.1
Sample C Male 39.6
Sample D Male 33.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 24.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 24.7
Samples: 4

Max nTPM: 26.9
Min nTPM: 22.9
Sample A Male 22.9
Sample B Male 24.8
Sample C Female 26.9
Sample D Female 24.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.0
69080005 Antisense, RP_050324_01_C05, Mouse strain C57BL/6J (56 days, male) 6.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.