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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:167.1 nTPM
HPA:167.1 nTPM
GTEx:275.8 nTPM
FANTOM5:362.1 Scaled Tags Per Million
Pig:151.1 nTPM
Mouse:400.0 nTPM
Allen mouse:13.3 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 167.1
Sample id Sample description nTPM
Amygdala
nTPM: 151.9
2814 Male, age 76, right hemisphere 211.0
1987 Female, age 91, left hemisphere 153.1
2517 Female, age 94, left hemisphere 146.9
2695 Female, age 67, right hemisphere 129.9
2514 Male, age 75, right hemisphere 118.5
Basal amygdala
nTPM: 166.3
2243 Female, age 91, right hemisphere 203.6
1955 Male, age 76, both hemispheres 178.5
2609 Male, age 75, right hemisphere 167.5
2827 Female, age 67, right hemisphere 166.2
2685 Female, age 94, left hemisphere 155.4
2110 Male, age 80, left hemisphere 126.5
Central amygdala
nTPM: 157.2
1905 Male, age 76, both hemispheres 220.4
2826 Female, age 94, left hemisphere 164.4
2239 Male, age 80, left hemisphere 155.9
2515 Male, age 75, right hemisphere 150.4
2701 Female, age 91, right hemisphere 95.0
Corticomedial amygdala
nTPM: 167.1
2242 Female, age 91, right hemisphere 197.8
2829 Male, age 80, left hemisphere 183.2
2535 Female, age 67, right hemisphere 176.3
2428 Male, age 75, right hemisphere 156.6
2240 Male, age 76, both hemispheres 146.1
2429 Female, age 94, left hemisphere 142.5
Lateral amygdala
nTPM: 154.3
1883 Male, age 76, both hemispheres 203.6
2534 Female, age 94, left hemisphere 168.5
2830 Female, age 67, right hemisphere 149.2
2255 Female, age 91, right hemisphere 139.7
2256 Male, age 80, left hemisphere 135.6
2516 Male, age 75, right hemisphere 128.9
Stria terminalis, bed nucleus
nTPM: 125.9
2486 Female, age 94, both hemispheres 151.3
1974 Female, age 91, both hemispheres 132.9
2201 Male, age 74, unknown 93.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 275.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 275.8
Samples: 152

Max nTPM: 584.7
Min nTPM: 16.5
Std nTPM: 130.4
Median nTPM: 265.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 584.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 562.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 560.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 553.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 533.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 528.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 526.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 525.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 511.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 502.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 497.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 481.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 480.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 479.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 470.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 466.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 463.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 452.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 447.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 443.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 436.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 430.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 425.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 423.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 422.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 419.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 413.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 412.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 407.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 406.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 397.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 396.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 395.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 380.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 375.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 375.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 375.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 374.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 367.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 365.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 361.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 350.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 350.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 349.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 340.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 339.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 338.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 337.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 336.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 331.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 323.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 320.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 318.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 317.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 309.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 306.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 301.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 300.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 297.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 295.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 292.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 292.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 290.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 290.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 286.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 281.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 281.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 280.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 280.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 273.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 272.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 272.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 270.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 267.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 265.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 265.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 264.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 264.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 261.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 260.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 256.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 256.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 253.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 251.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 249.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 249.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 249.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 245.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 243.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 241.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 240.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 235.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 232.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 219.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 217.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 213.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 211.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 203.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 203.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 202.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 199.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 197.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 194.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 191.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 189.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 188.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 187.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 181.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 180.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 176.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 176.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 175.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 175.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 171.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 170.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 168.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 165.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 164.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 162.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 161.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 157.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 156.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 151.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 149.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 146.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 140.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 138.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 138.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 135.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 135.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 131.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 128.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 127.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 123.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 123.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 116.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 113.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 109.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 107.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 106.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 100.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 98.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 98.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 96.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 95.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 92.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 80.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 77.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 62.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 52.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 45.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 16.5
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 362.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 362.1
FF:10151-102I7 76 years, female 362.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 151.1
Pig sample Sample description nTPM
Amygdala
nTPM: 151.1
Samples: 4

Max nTPM: 200.3
Min nTPM: 79.4
Sample A Female 200.3
Sample B Female 79.4
Sample C Male 170.9
Sample D Male 153.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 400.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 400.0
Samples: 4

Max nTPM: 436.4
Min nTPM: 335.0
Sample A Male 335.0
Sample B Male 421.0
Sample C Female 436.4
Sample D Female 407.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 13.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 13.3
74821712 Antisense, RP_060321_02_C05, Mouse strain C57BL/6J (56 days, male) 13.3

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