MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:153.1 nTPM
HPA:153.1 nTPM
GTEx:81.3 nTPM
FANTOM5:53.7 Scaled Tags Per Million
Pig:59.9 nTPM
Mouse:98.1 nTPM
Allen mouse:5.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 153.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 98.6
2586 Male, age 75, left hemisphere 170.2
2019 Male, age 18, unknown 165.8
2828 Female, age 72, unknown 131.8
1827 Male, age 72, unknown 106.5
2666 Male, age 74, left hemisphere 89.4
2219 Male, age 76, both hemispheres 73.0
1870 Female, age 42, unknown 72.4
2411 Female, age 72, unknown 62.7
1833 Male, age 53, unknown 57.6
1830 Male, age 51, unknown 56.9
Dorsal raphe nucleus
nTPM: 77.9
2298 Female, age 72, unknown 93.4
2016 Female, age 72, unknown 84.8
1828 Male, age 53, unknown 84.6
2047 Male, age 72, unknown 71.2
2750 Male, age 76, both hemispheres 55.6
Inferior colliculus
nTPM: 70.6
2097 Female, age 72, unknown 78.3
1890 Male, age 53, unknown 77.1
2849 Male, age 72, unknown 65.3
1848 Female, age 42, unknown 61.7
Median raphe nucleus
nTPM: 60.9
2220 Male, age 76, midline 60.9
Pedunculopontine tegmental nucleus
nTPM: 57.8
1921 Female, age 85, both hemispheres 65.3
2334 Male, age 80, both hemispheres 61.0
2338 Male, age 61, both hemispheres 47.0
Periaquaductal grey, anterior
nTPM: 108.8
1795 Male, age 51, unknown 161.4
2502 Female, age 75, unknown 104.6
1947 Male, age 18, unknown 60.5
Periaquaductal grey, dorsal
nTPM: 97.4
2850 Male, age 76, both hemispheres 109.5
1831 Male, age 72, unknown 100.4
1840 Male, age 53, unknown 100.2
2464 Female, age 72, unknown 79.4
Periaquaductal grey, lateral
nTPM: 108.8
2272 Male, age 74, both hemispheres 125.1
2140 Male, age 76, both hemispheres 108.9
2053 Male, age 18, unknown 92.4
Pretectal area
nTPM: 153.1
1816 Male, age 51, unknown 264.6
2007 Male, age 72, unknown 231.8
1817 Female, age 42, unknown 227.1
1815 Male, age 53, unknown 220.7
1944 Female, age 72, unknown 193.2
2273 Male, age 74, both hemispheres 124.4
2667 Female, age 75, unknown 104.5
2407 Male, age 75, both hemispheres 104.1
2224 Female, age 72, unknown 81.6
2316 Male, age 76, right hemisphere 66.9
2825 Male, age 18, unknown 65.7
Red nucleus
nTPM: 70.0
2785 Male, age 18, unknown 164.1
2584 Male, age 75, left hemisphere 103.0
2725 Female, age 75, unknown 75.9
2588 Male, age 74, left hemisphere 69.3
2503 Female, age 72, unknown 66.6
2227 Male, age 72, unknown 56.8
2769 Male, age 72, unknown 56.7
1904 Male, age 53, unknown 55.3
1954 Female, age 42, unknown 50.4
1865 Male, age 51, unknown 49.3
2823 Male, age 76, right hemisphere 48.6
1821 Female, age 72, unknown 43.7
Substantia nigra
nTPM: 92.3
1889 Female, age 72, unknown 153.3
2665 Male, age 74, both hemispheres 118.8
2583 Male, age 75, right hemisphere 117.0
2590 Female, age 75, unknown 92.0
1851 Male, age 51, unknown 89.9
1916 Female, age 42, unknown 89.6
2409 Female, age 72, unknown 70.8
1941 Male, age 53, unknown 68.0
2241 Male, age 72, unknown 62.8
2699 Male, age 18, unknown 60.9
Superior colliculus
nTPM: 120.7
2664 Male, age 75, both hemispheres 179.3
2087 Female, age 72, unknown 177.6
2261 Male, age 18, unknown 144.6
1796 Male, age 53, unknown 132.9
1913 Female, age 42, unknown 128.2
1995 Male, age 72, unknown 118.5
2668 Female, age 75, unknown 103.4
2587 Male, age 74, left hemisphere 92.6
1839 Male, age 51, unknown 75.3
1895 Male, age 76, right hemisphere 54.4
Ventral tegmental area
nTPM: 75.7
1942 Male, age 51, unknown 82.2
2410 Female, age 72, unknown 78.9
2021 Male, age 53, unknown 78.2
1915 Female, age 42, unknown 74.8
2218 Male, age 76, both hemispheres 70.3
2223 Female, age 72, unknown 70.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 81.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 81.3
Samples: 139

Max nTPM: 264.1
Min nTPM: 17.6
Std nTPM: 35.0
Median nTPM: 75.8
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 264.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 168.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 168.3
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 164.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 149.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 146.9
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 139.9
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 132.1
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 130.6
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 129.9
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 128.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 53.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 53.7
FF:10158-103A5 76 years, female 53.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 59.9
Pig sample Sample description nTPM
Midbrain
nTPM: 56.4
Samples: 4

Max nTPM: 113.2
Min nTPM: 30.1
Sample A Female 30.1
Sample B Female 32.3
Sample C Male 113.2
Sample D Male 50.0
Periaqueductal gray
nTPM: 36.3
Samples: 3

Max nTPM: 42.8
Min nTPM: 32.5
Sample B Female 33.5
Sample C Male 42.8
Sample D Male 32.5
Substantia nigra
nTPM: 35.1
Samples: 4

Max nTPM: 40.9
Min nTPM: 30.8
Sample A Female 37.6
Sample B Female 30.8
Sample C Male 40.9
Sample D Male 31.2
Superior colliculi
nTPM: 59.9
Samples: 4

Max nTPM: 88.8
Min nTPM: 45.3
Sample A Female 45.3
Sample B Female 56.6
Sample C Male 88.8
Sample D Male 48.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 98.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 98.1
Samples: 4

Max nTPM: 111.1
Min nTPM: 82.8
Sample A Male 111.1
Sample B Male 82.8
Sample C Female 99.0
Sample D Female 99.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.2
74821712 Antisense, RP_060321_02_C05, Mouse strain C57BL/6J (56 days, male) 5.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.