MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:25.7 nTPM
HPA:25.7 nTPM
GTEx:34.2 nTPM
FANTOM5:11.6 Scaled Tags Per Million
Pig:19.3 nTPM
Mouse:16.4 nTPM
Allen mouse:2.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 25.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 17.0
2219 Male, age 76, both hemispheres 31.8
2586 Male, age 75, left hemisphere 21.6
2828 Female, age 72, unknown 21.6
1827 Male, age 72, unknown 18.5
2666 Male, age 74, left hemisphere 17.9
2019 Male, age 18, unknown 15.5
1833 Male, age 53, unknown 12.0
2411 Female, age 72, unknown 11.8
1830 Male, age 51, unknown 10.9
1870 Female, age 42, unknown 8.3
Dorsal raphe nucleus
nTPM: 14.8
2298 Female, age 72, unknown 17.8
2016 Female, age 72, unknown 16.9
2047 Male, age 72, unknown 16.4
1828 Male, age 53, unknown 13.2
2750 Male, age 76, both hemispheres 10.0
Inferior colliculus
nTPM: 14.0
2097 Female, age 72, unknown 15.7
1890 Male, age 53, unknown 15.2
1848 Female, age 42, unknown 13.6
2849 Male, age 72, unknown 11.4
Median raphe nucleus
nTPM: 13.2
2220 Male, age 76, midline 13.2
Pedunculopontine tegmental nucleus
nTPM: 14.6
2334 Male, age 80, both hemispheres 15.6
1921 Female, age 85, both hemispheres 15.0
2338 Male, age 61, both hemispheres 13.3
Periaquaductal grey, anterior
nTPM: 19.2
1795 Male, age 51, unknown 20.6
1947 Male, age 18, unknown 20.2
2502 Female, age 75, unknown 16.9
Periaquaductal grey, dorsal
nTPM: 13.3
1840 Male, age 53, unknown 14.8
2464 Female, age 72, unknown 13.5
1831 Male, age 72, unknown 13.0
2850 Male, age 76, both hemispheres 11.8
Periaquaductal grey, lateral
nTPM: 11.9
2272 Male, age 74, both hemispheres 13.8
2140 Male, age 76, both hemispheres 11.8
2053 Male, age 18, unknown 10.0
Pretectal area
nTPM: 12.5
1817 Female, age 42, unknown 15.7
1816 Male, age 51, unknown 15.0
2007 Male, age 72, unknown 14.9
1944 Female, age 72, unknown 13.6
2667 Female, age 75, unknown 12.8
2825 Male, age 18, unknown 12.4
2273 Male, age 74, both hemispheres 11.9
1815 Male, age 53, unknown 11.5
2224 Female, age 72, unknown 11.3
2407 Male, age 75, both hemispheres 11.0
2316 Male, age 76, right hemisphere 7.5
Red nucleus
nTPM: 13.5
2588 Male, age 74, left hemisphere 17.0
2584 Male, age 75, left hemisphere 15.4
2227 Male, age 72, unknown 14.6
2769 Male, age 72, unknown 14.5
2785 Male, age 18, unknown 14.5
2503 Female, age 72, unknown 14.4
1954 Female, age 42, unknown 13.7
1904 Male, age 53, unknown 13.1
1821 Female, age 72, unknown 12.9
2823 Male, age 76, right hemisphere 11.7
1865 Male, age 51, unknown 10.3
2725 Female, age 75, unknown 9.6
Substantia nigra
nTPM: 25.7
2665 Male, age 74, both hemispheres 40.3
1916 Female, age 42, unknown 37.8
1851 Male, age 51, unknown 33.2
1941 Male, age 53, unknown 27.5
2699 Male, age 18, unknown 23.7
2241 Male, age 72, unknown 23.0
2583 Male, age 75, right hemisphere 20.5
2409 Female, age 72, unknown 18.6
2590 Female, age 75, unknown 17.4
1889 Female, age 72, unknown 14.7
Superior colliculus
nTPM: 13.5
2668 Female, age 75, unknown 26.8
1796 Male, age 53, unknown 18.7
2664 Male, age 75, both hemispheres 15.5
2261 Male, age 18, unknown 14.1
2087 Female, age 72, unknown 13.6
1839 Male, age 51, unknown 11.1
2587 Male, age 74, left hemisphere 9.7
1995 Male, age 72, unknown 8.9
1913 Female, age 42, unknown 8.8
1895 Male, age 76, right hemisphere 7.9
Ventral tegmental area
nTPM: 19.5
2410 Female, age 72, unknown 25.4
1915 Female, age 42, unknown 23.4
1942 Male, age 51, unknown 21.7
2218 Male, age 76, both hemispheres 19.9
2021 Male, age 53, unknown 15.4
2223 Female, age 72, unknown 11.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 34.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 34.2
Samples: 139

Max nTPM: 105.9
Min nTPM: 5.9
Std nTPM: 18.5
Median nTPM: 28.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 105.9
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 100.7
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 81.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 76.1
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 75.5
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 72.2
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 71.1
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 70.5
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 66.7
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 63.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 62.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 11.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 11.6
FF:10158-103A5 76 years, female 11.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 19.3
Pig sample Sample description nTPM
Midbrain
nTPM: 15.4
Samples: 4

Max nTPM: 18.2
Min nTPM: 11.5
Sample A Female 11.5
Sample B Female 15.8
Sample C Male 16.1
Sample D Male 18.2
Periaqueductal gray
nTPM: 14.9
Samples: 3

Max nTPM: 16.7
Min nTPM: 11.9
Sample B Female 16.1
Sample C Male 16.7
Sample D Male 11.9
Substantia nigra
nTPM: 19.3
Samples: 4

Max nTPM: 23.7
Min nTPM: 11.2
Sample A Female 23.6
Sample B Female 18.6
Sample C Male 23.7
Sample D Male 11.2
Superior colliculi
nTPM: 16.1
Samples: 4

Max nTPM: 18.9
Min nTPM: 13.5
Sample A Female 16.8
Sample B Female 18.9
Sample C Male 13.5
Sample D Male 15.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 16.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 16.5
Samples: 4

Max nTPM: 19.7
Min nTPM: 12.7
Sample A Male 19.7
Sample B Male 17.2
Sample C Female 12.7
Sample D Female 16.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.9
69290818 Antisense, RP_050407_04_G07, Mouse strain C57BL/6J (56 days, male) 2.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.