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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:59.7 nTPM
HPA:59.7 nTPM
GTEx:79.5 nTPM
FANTOM5:230.7 Scaled Tags Per Million
Pig:51.1 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 59.7
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 54.6
1981 Female, age 72, midline 58.4
2194 Female, age 79, both hemispheres 56.8
2816 Male, age 47, midline 53.9
2048 Male, age 55, midline 53.1
2565 Male, age 75, midline 50.9
Cervical spinal cord, dorsal horn
nTPM: 59.7
2296 Male, age 66, both hemispheres 80.1
2173 Female, age 72, unknown 71.9
2069 Male, age 47, both hemispheres 59.8
1877 Male, age 55, unknown 53.8
2297 Male, age 75, both hemispheres 47.9
2721 Male, age 90, both hemispheres 44.9
Cervical spinal cord, ventral horn
nTPM: 56.8
2068 Male, age 55, unknown 63.1
2820 Female, age 79, both hemispheres 60.4
2098 Female, age 72, unknown 57.0
2480 Male, age 75, both hemispheres 55.9
2809 Male, age 90, both hemispheres 54.5
2295 Male, age 66, both hemispheres 50.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 79.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 79.5
Samples: 159

Max nTPM: 164.2
Min nTPM: 22.7
Std nTPM: 23.4
Median nTPM: 77.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 164.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 144.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 132.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 128.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 126.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 124.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 118.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 118.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 117.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 117.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 116.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 115.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 114.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 114.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 114.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 113.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 112.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 110.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 109.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 109.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 108.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 107.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 105.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 103.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 103.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 102.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 100.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 100.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 100.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 100.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 99.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 98.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 98.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 97.7
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 97.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 96.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 96.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 95.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 95.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 95.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 94.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 92.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 92.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 92.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 92.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 92.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 92.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 92.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 89.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 89.3
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 89.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 88.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 88.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 88.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 88.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 87.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 86.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 86.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 84.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 84.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 84.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 83.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 83.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 82.5
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 82.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 82.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 81.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 81.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 80.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 80.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 80.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 80.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 80.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 80.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 78.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 78.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 78.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 77.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 77.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 77.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 76.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 76.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 76.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 76.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 76.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 76.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 75.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 74.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 74.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 74.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 73.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 73.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 72.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 72.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 72.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 71.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 71.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 71.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 70.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 70.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 69.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 69.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 68.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 68.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 68.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 67.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 67.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 66.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 65.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 65.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 65.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 64.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 64.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 64.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 64.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 64.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 64.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 63.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 63.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 63.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 63.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 63.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 62.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 61.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 61.7
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 61.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 60.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 60.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 60.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 58.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 58.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 57.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 57.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 55.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 55.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 55.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 54.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 54.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 54.1
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 53.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 52.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 52.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 52.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 52.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 50.7
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 49.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 49.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 48.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 48.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 47.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 47.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 44.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 43.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 42.0
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 38.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 36.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 36.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 29.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 22.7
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 230.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 230.7
FF:10181-103D1 60 years, female 246.2
FF:10159-103A6 76 years, female 215.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 51.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 51.1
Samples: 4

Max nTPM: 63.4
Min nTPM: 44.0
Sample A Female 44.0
Sample B Female 51.0
Sample C Male 63.4
Sample D Male 46.0
Ventral spinal cord
nTPM: 44.1
Samples: 4

Max nTPM: 46.6
Min nTPM: 41.0
Sample A Female 44.4
Sample B Female 41.0
Sample C Male 44.3
Sample D Male 46.6

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