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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:147.5 nTPM
HPA:147.5 nTPM
GTEx:134.5 nTPM
FANTOM5:86.9 Scaled Tags Per Million
Pig:73.5 nTPM
Mouse:6.4 nTPM

AMYGDALA - HPA Brain RNA-seq
Max nTPM 147.5
Sample id Sample description nTPM
Amygdala
nTPM: 147.4
2695 Female, age 67, right hemisphere 152.7
2814 Male, age 76, right hemisphere 149.6
2514 Male, age 75, right hemisphere 147.7
2517 Female, age 94, left hemisphere 147.0
1987 Female, age 91, left hemisphere 139.8
Basal amygdala
nTPM: 145.9
2609 Male, age 75, right hemisphere 150.2
2243 Female, age 91, right hemisphere 148.3
2685 Female, age 94, left hemisphere 145.6
1955 Male, age 76, both hemispheres 145.3
2827 Female, age 67, right hemisphere 145.0
2110 Male, age 80, left hemisphere 141.1
Central amygdala
nTPM: 147.5
2826 Female, age 94, left hemisphere 154.5
1905 Male, age 76, both hemispheres 146.5
2515 Male, age 75, right hemisphere 146.0
2239 Male, age 80, left hemisphere 145.6
2701 Female, age 91, right hemisphere 144.9
Corticomedial amygdala
nTPM: 143.3
2428 Male, age 75, right hemisphere 147.1
2429 Female, age 94, left hemisphere 144.5
2829 Male, age 80, left hemisphere 144.0
2240 Male, age 76, both hemispheres 141.8
2535 Female, age 67, right hemisphere 141.8
2242 Female, age 91, right hemisphere 140.5
Lateral amygdala
nTPM: 145.5
2534 Female, age 94, left hemisphere 149.9
2516 Male, age 75, right hemisphere 148.4
2830 Female, age 67, right hemisphere 147.1
1883 Male, age 76, both hemispheres 144.4
2256 Male, age 80, left hemisphere 142.2
2255 Female, age 91, right hemisphere 140.7
Stria terminalis, bed nucleus
nTPM: 139.2
1974 Female, age 91, both hemispheres 140.2
2201 Male, age 74, unknown 139.9
2486 Female, age 94, both hemispheres 137.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 134.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 134.5
Samples: 152

Max nTPM: 297.8
Min nTPM: 55.1
Std nTPM: 44.3
Median nTPM: 126.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 297.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 270.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 267.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 260.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 249.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 248.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 231.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 223.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 221.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 221.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 212.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 207.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 204.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 202.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 201.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 198.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 193.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 190.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 186.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 182.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 181.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 177.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 175.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 174.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 170.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 169.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 167.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 167.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 166.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 165.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 165.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 161.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 157.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 157.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 155.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 155.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 154.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 152.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 152.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 148.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 147.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 147.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 146.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 146.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 145.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 145.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 145.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 143.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 142.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 141.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 141.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 141.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 140.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 140.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 140.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 139.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 139.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 139.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 137.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 136.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 136.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 135.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 135.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 134.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 132.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 132.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 131.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 131.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 130.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 128.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 127.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 127.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 127.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 127.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 127.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 127.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 126.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 126.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 125.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 124.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 124.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 124.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 123.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 122.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 121.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 121.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 120.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 120.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 120.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 119.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 117.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 117.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 117.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 116.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 115.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 115.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 114.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 113.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 112.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 112.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 112.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 110.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 110.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 109.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 109.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 107.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 106.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 105.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 103.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 103.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 103.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 103.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 103.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 102.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 102.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 102.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 101.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 101.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 101.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 101.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 100.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 100.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 99.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 98.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 98.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 97.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 97.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 97.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 94.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 94.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 93.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 93.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 93.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 92.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 92.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 92.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 91.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 90.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 88.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 88.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 86.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 83.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 81.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 79.5
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 79.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 75.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 73.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 69.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 69.0
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 68.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 68.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 55.1
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 86.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 86.9
FF:10151-102I7 76 years, female 86.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 73.5
Pig sample Sample description nTPM
Amygdala
nTPM: 73.5
Samples: 4

Max nTPM: 94.3
Min nTPM: 58.1
Sample A Female 94.3
Sample B Female 67.9
Sample C Male 73.8
Sample D Male 58.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 6.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 6.4
Samples: 4

Max nTPM: 7.7
Min nTPM: 5.6
Sample A Male 6.3
Sample B Male 5.6
Sample C Female 7.7
Sample D Female 6.0

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