MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:39.7 nTPM
HPA:39.7 nTPM
GTEx:53.2 nTPM
FANTOM5:41.0 Scaled Tags Per Million
Pig:40.4 nTPM
Mouse:132.2 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 39.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 37.7
1870 Female, age 42, unknown 39.7
2019 Male, age 18, unknown 39.1
2828 Female, age 72, unknown 38.5
1827 Male, age 72, unknown 38.2
2219 Male, age 76, both hemispheres 37.8
2586 Male, age 75, left hemisphere 37.1
1830 Male, age 51, unknown 36.8
2411 Female, age 72, unknown 36.7
1833 Male, age 53, unknown 36.6
2666 Male, age 74, left hemisphere 36.4
Dorsal raphe nucleus
nTPM: 37.4
2750 Male, age 76, both hemispheres 39.9
1828 Male, age 53, unknown 37.7
2047 Male, age 72, unknown 37.2
2016 Female, age 72, unknown 36.1
2298 Female, age 72, unknown 36.0
Inferior colliculus
nTPM: 36.9
1890 Male, age 53, unknown 37.9
2097 Female, age 72, unknown 37.0
1848 Female, age 42, unknown 36.8
2849 Male, age 72, unknown 35.8
Median raphe nucleus
nTPM: 39.7
2220 Male, age 76, midline 39.7
Pedunculopontine tegmental nucleus
nTPM: 38.4
2338 Male, age 61, both hemispheres 39.0
2334 Male, age 80, both hemispheres 38.5
1921 Female, age 85, both hemispheres 37.8
Periaquaductal grey, anterior
nTPM: 37.3
2502 Female, age 75, unknown 39.2
1947 Male, age 18, unknown 36.7
1795 Male, age 51, unknown 36.1
Periaquaductal grey, dorsal
nTPM: 36.7
1831 Male, age 72, unknown 37.0
1840 Male, age 53, unknown 36.7
2464 Female, age 72, unknown 36.5
2850 Male, age 76, both hemispheres 36.5
Periaquaductal grey, lateral
nTPM: 36.6
2053 Male, age 18, unknown 37.2
2272 Male, age 74, both hemispheres 36.3
2140 Male, age 76, both hemispheres 36.2
Pretectal area
nTPM: 37.9
1816 Male, age 51, unknown 40.8
1944 Female, age 72, unknown 40.5
2007 Male, age 72, unknown 38.9
2667 Female, age 75, unknown 38.7
1817 Female, age 42, unknown 38.0
1815 Male, age 53, unknown 37.7
2407 Male, age 75, both hemispheres 37.7
2224 Female, age 72, unknown 36.4
2273 Male, age 74, both hemispheres 36.2
2825 Male, age 18, unknown 36.1
2316 Male, age 76, right hemisphere 35.8
Red nucleus
nTPM: 38.5
1865 Male, age 51, unknown 40.6
1821 Female, age 72, unknown 40.3
1954 Female, age 42, unknown 40.0
1904 Male, age 53, unknown 39.1
2785 Male, age 18, unknown 39.0
2227 Male, age 72, unknown 38.7
2823 Male, age 76, right hemisphere 38.5
2725 Female, age 75, unknown 38.3
2769 Male, age 72, unknown 37.8
2503 Female, age 72, unknown 37.4
2588 Male, age 74, left hemisphere 36.3
2584 Male, age 75, left hemisphere 35.9
Substantia nigra
nTPM: 38.7
2409 Female, age 72, unknown 42.1
1916 Female, age 42, unknown 40.2
1851 Male, age 51, unknown 39.9
1889 Female, age 72, unknown 39.2
1941 Male, age 53, unknown 38.7
2699 Male, age 18, unknown 38.1
2241 Male, age 72, unknown 37.7
2590 Female, age 75, unknown 37.3
2665 Male, age 74, both hemispheres 36.9
2583 Male, age 75, right hemisphere 36.6
Superior colliculus
nTPM: 38.2
1913 Female, age 42, unknown 41.0
2087 Female, age 72, unknown 39.0
1796 Male, age 53, unknown 38.6
1995 Male, age 72, unknown 38.5
2261 Male, age 18, unknown 38.4
2587 Male, age 74, left hemisphere 38.2
1895 Male, age 76, right hemisphere 37.7
2664 Male, age 75, both hemispheres 37.7
2668 Female, age 75, unknown 36.7
1839 Male, age 51, unknown 36.3
Ventral tegmental area
nTPM: 38.2
2223 Female, age 72, unknown 40.0
1915 Female, age 42, unknown 39.1
2218 Male, age 76, both hemispheres 38.7
2410 Female, age 72, unknown 38.1
1942 Male, age 51, unknown 36.5
2021 Male, age 53, unknown 36.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 53.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 53.2
Samples: 139

Max nTPM: 96.2
Min nTPM: 28.6
Std nTPM: 12.8
Median nTPM: 50.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 96.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 92.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 91.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 87.2
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 83.5
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 82.6
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 80.5
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 77.6
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 77.2
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 76.3
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 75.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 41.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 41.0
FF:10158-103A5 76 years, female 41.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 40.4
Pig sample Sample description nTPM
Midbrain
nTPM: 37.1
Samples: 4

Max nTPM: 50.1
Min nTPM: 30.1
Sample A Female 50.1
Sample B Female 37.0
Sample C Male 31.1
Sample D Male 30.1
Periaqueductal gray
nTPM: 32.3
Samples: 3

Max nTPM: 35.5
Min nTPM: 28.7
Sample B Female 35.5
Sample C Male 32.7
Sample D Male 28.7
Substantia nigra
nTPM: 35.2
Samples: 4

Max nTPM: 45.8
Min nTPM: 26.7
Sample A Female 45.8
Sample B Female 37.1
Sample C Male 31.3
Sample D Male 26.7
Superior colliculi
nTPM: 40.4
Samples: 4

Max nTPM: 47.4
Min nTPM: 34.6
Sample A Female 47.4
Sample B Female 44.1
Sample C Male 35.4
Sample D Male 34.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 132.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 132.2
Samples: 4

Max nTPM: 149.6
Min nTPM: 121.2
Sample A Male 129.9
Sample B Male 121.2
Sample C Female 128.1
Sample D Female 149.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
75043146 Antisense, RP_060220_02_G07, Mouse strain C57BL/6J (56 days, male) 0.8
76098399 Antisense, RP_060626_01_G12, Mouse strain C57BL/6J (56 days, male) 0.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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