MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:22.5 nTPM
HPA:22.5 nTPM
GTEx:25.6 nTPM
FANTOM5:56.0 Scaled Tags Per Million
Mouse:0.9 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 22.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 18.1
1833 Male, age 53, unknown 20.4
1870 Female, age 42, unknown 19.9
2411 Female, age 72, unknown 19.9
1830 Male, age 51, unknown 19.8
2019 Male, age 18, unknown 19.0
2828 Female, age 72, unknown 17.5
2219 Male, age 76, both hemispheres 17.3
2666 Male, age 74, left hemisphere 16.6
1827 Male, age 72, unknown 15.9
2586 Male, age 75, left hemisphere 15.1
Dorsal raphe nucleus
nTPM: 15.1
2750 Male, age 76, both hemispheres 19.1
2016 Female, age 72, unknown 15.3
1828 Male, age 53, unknown 14.8
2298 Female, age 72, unknown 13.6
2047 Male, age 72, unknown 12.7
Inferior colliculus
nTPM: 15.4
2849 Male, age 72, unknown 15.7
1848 Female, age 42, unknown 15.5
2097 Female, age 72, unknown 15.3
1890 Male, age 53, unknown 15.0
Median raphe nucleus
nTPM: 13.1
2220 Male, age 76, midline 13.1
Pedunculopontine tegmental nucleus
nTPM: 15.9
2334 Male, age 80, both hemispheres 16.7
1921 Female, age 85, both hemispheres 16.1
2338 Male, age 61, both hemispheres 15.0
Periaquaductal grey, anterior
nTPM: 13.8
1947 Male, age 18, unknown 14.6
2502 Female, age 75, unknown 14.0
1795 Male, age 51, unknown 12.7
Periaquaductal grey, dorsal
nTPM: 13.5
2464 Female, age 72, unknown 15.1
1831 Male, age 72, unknown 13.5
2850 Male, age 76, both hemispheres 12.9
1840 Male, age 53, unknown 12.5
Periaquaductal grey, lateral
nTPM: 13.6
2053 Male, age 18, unknown 14.5
2272 Male, age 74, both hemispheres 14.2
2140 Male, age 76, both hemispheres 12.2
Pretectal area
nTPM: 15.2
2316 Male, age 76, right hemisphere 18.2
1815 Male, age 53, unknown 18.1
1817 Female, age 42, unknown 16.7
2007 Male, age 72, unknown 15.3
2667 Female, age 75, unknown 15.1
2825 Male, age 18, unknown 15.1
2407 Male, age 75, both hemispheres 14.6
2224 Female, age 72, unknown 13.9
2273 Male, age 74, both hemispheres 13.6
1816 Male, age 51, unknown 13.3
1944 Female, age 72, unknown 13.3
Red nucleus
nTPM: 22.5
1904 Male, age 53, unknown 26.6
1865 Male, age 51, unknown 26.1
2823 Male, age 76, right hemisphere 26.0
1821 Female, age 72, unknown 25.2
1954 Female, age 42, unknown 24.3
2503 Female, age 72, unknown 22.8
2227 Male, age 72, unknown 22.5
2769 Male, age 72, unknown 22.4
2785 Male, age 18, unknown 20.8
2725 Female, age 75, unknown 20.1
2588 Male, age 74, left hemisphere 18.1
2584 Male, age 75, left hemisphere 15.3
Substantia nigra
nTPM: 15.8
2409 Female, age 72, unknown 19.2
1851 Male, age 51, unknown 17.2
1889 Female, age 72, unknown 17.1
2583 Male, age 75, right hemisphere 15.9
2699 Male, age 18, unknown 15.7
2241 Male, age 72, unknown 15.4
1941 Male, age 53, unknown 15.0
2590 Female, age 75, unknown 14.8
1916 Female, age 42, unknown 14.1
2665 Male, age 74, both hemispheres 13.9
Superior colliculus
nTPM: 17.2
1995 Male, age 72, unknown 22.4
1895 Male, age 76, right hemisphere 20.8
1913 Female, age 42, unknown 20.1
2668 Female, age 75, unknown 18.5
1839 Male, age 51, unknown 16.7
2587 Male, age 74, left hemisphere 16.5
1796 Male, age 53, unknown 15.2
2087 Female, age 72, unknown 14.2
2261 Male, age 18, unknown 14.2
2664 Male, age 75, both hemispheres 13.4
Ventral tegmental area
nTPM: 16.6
2410 Female, age 72, unknown 20.4
2223 Female, age 72, unknown 18.3
1915 Female, age 42, unknown 16.0
1942 Male, age 51, unknown 15.5
2218 Male, age 76, both hemispheres 15.5
2021 Male, age 53, unknown 14.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 25.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 25.6
Samples: 139

Max nTPM: 73.2
Min nTPM: 3.1
Std nTPM: 15.3
Median nTPM: 21.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 73.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 68.2
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 68.2
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 65.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 62.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 62.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 61.4
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 59.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 58.0
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 58.0
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 56.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 56.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 56.0
FF:10158-103A5 76 years, female 56.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 0.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.9
Samples: 4

Max nTPM: 1.2
Min nTPM: 0.4
Sample A Male 0.8
Sample B Male 1.1
Sample C Female 0.4
Sample D Female 1.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
71809418 Antisense, RP_051005_02_A12, Mouse strain C57BL/6J (56 days, male) 0.0

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