MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:79.1 nTPM
HPA:79.1 nTPM
GTEx:37.8 nTPM
FANTOM5:25.3 Scaled Tags Per Million
Pig:14.2 nTPM
Mouse:42.3 nTPM
Allen mouse:9.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 79.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 22.1
2219 Male, age 76, both hemispheres 61.6
2586 Male, age 75, left hemisphere 28.8
1827 Male, age 72, unknown 20.2
2828 Female, age 72, unknown 20.1
1833 Male, age 53, unknown 20.0
2411 Female, age 72, unknown 17.4
2666 Male, age 74, left hemisphere 16.8
1870 Female, age 42, unknown 14.8
1830 Male, age 51, unknown 13.6
2019 Male, age 18, unknown 7.8
Dorsal raphe nucleus
nTPM: 23.8
2047 Male, age 72, unknown 27.5
2298 Female, age 72, unknown 27.3
2016 Female, age 72, unknown 26.2
1828 Male, age 53, unknown 20.3
2750 Male, age 76, both hemispheres 17.7
Inferior colliculus
nTPM: 23.3
1890 Male, age 53, unknown 27.1
2849 Male, age 72, unknown 24.9
1848 Female, age 42, unknown 21.8
2097 Female, age 72, unknown 19.7
Median raphe nucleus
nTPM: 37.5
2220 Male, age 76, midline 37.5
Pedunculopontine tegmental nucleus
nTPM: 15.1
1921 Female, age 85, both hemispheres 22.3
2334 Male, age 80, both hemispheres 16.5
2338 Male, age 61, both hemispheres 6.5
Periaquaductal grey, anterior
nTPM: 24.1
2502 Female, age 75, unknown 32.1
1795 Male, age 51, unknown 20.5
1947 Male, age 18, unknown 19.7
Periaquaductal grey, dorsal
nTPM: 26.7
1840 Male, age 53, unknown 40.4
1831 Male, age 72, unknown 24.2
2850 Male, age 76, both hemispheres 23.5
2464 Female, age 72, unknown 18.6
Periaquaductal grey, lateral
nTPM: 21.8
2140 Male, age 76, both hemispheres 25.6
2053 Male, age 18, unknown 23.0
2272 Male, age 74, both hemispheres 16.9
Pretectal area
nTPM: 19.5
2667 Female, age 75, unknown 29.8
2825 Male, age 18, unknown 26.8
1944 Female, age 72, unknown 26.4
2224 Female, age 72, unknown 23.8
1816 Male, age 51, unknown 20.9
2407 Male, age 75, both hemispheres 18.4
2273 Male, age 74, both hemispheres 16.8
2316 Male, age 76, right hemisphere 14.6
1815 Male, age 53, unknown 13.9
2007 Male, age 72, unknown 12.2
1817 Female, age 42, unknown 11.0
Red nucleus
nTPM: 17.6
2584 Male, age 75, left hemisphere 24.4
1821 Female, age 72, unknown 23.7
2227 Male, age 72, unknown 20.9
1954 Female, age 42, unknown 20.0
2769 Male, age 72, unknown 19.8
1904 Male, age 53, unknown 19.2
2725 Female, age 75, unknown 17.7
2503 Female, age 72, unknown 16.7
2588 Male, age 74, left hemisphere 15.4
2823 Male, age 76, right hemisphere 13.2
1865 Male, age 51, unknown 12.2
2785 Male, age 18, unknown 8.4
Substantia nigra
nTPM: 79.1
1916 Female, age 42, unknown 153.3
2699 Male, age 18, unknown 143.1
1851 Male, age 51, unknown 106.2
2241 Male, age 72, unknown 97.0
1941 Male, age 53, unknown 73.2
2665 Male, age 74, both hemispheres 69.4
2409 Female, age 72, unknown 64.3
2590 Female, age 75, unknown 30.4
1889 Female, age 72, unknown 27.3
2583 Male, age 75, right hemisphere 27.2
Superior colliculus
nTPM: 19.1
2664 Male, age 75, both hemispheres 29.8
1796 Male, age 53, unknown 26.7
2087 Female, age 72, unknown 23.4
2668 Female, age 75, unknown 21.3
2261 Male, age 18, unknown 20.5
1839 Male, age 51, unknown 18.0
1895 Male, age 76, right hemisphere 17.6
2587 Male, age 74, left hemisphere 16.2
1995 Male, age 72, unknown 9.1
1913 Female, age 42, unknown 8.4
Ventral tegmental area
nTPM: 63.0
1915 Female, age 42, unknown 97.2
2218 Male, age 76, both hemispheres 90.3
2410 Female, age 72, unknown 76.8
1942 Male, age 51, unknown 62.5
2021 Male, age 53, unknown 28.3
2223 Female, age 72, unknown 23.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 37.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 37.8
Samples: 139

Max nTPM: 141.5
Min nTPM: 4.3
Std nTPM: 27.9
Median nTPM: 28.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 141.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 124.6
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 121.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 119.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 114.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 104.2
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 104.1
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 100.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 96.4
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 94.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 85.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 25.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 25.3
FF:10158-103A5 76 years, female 25.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 14.2
Pig sample Sample description nTPM
Midbrain
nTPM: 13.6
Samples: 4

Max nTPM: 19.9
Min nTPM: 5.5
Sample A Female 5.5
Sample B Female 11.4
Sample C Male 19.9
Sample D Male 17.4
Periaqueductal gray
nTPM: 10.3
Samples: 3

Max nTPM: 12.6
Min nTPM: 8.0
Sample B Female 10.2
Sample C Male 12.6
Sample D Male 8.0
Substantia nigra
nTPM: 14.2
Samples: 4

Max nTPM: 20.5
Min nTPM: 5.5
Sample A Female 19.9
Sample B Female 10.8
Sample C Male 20.5
Sample D Male 5.5
Superior colliculi
nTPM: 12.6
Samples: 4

Max nTPM: 14.8
Min nTPM: 10.2
Sample A Female 11.5
Sample B Female 10.2
Sample C Male 14.8
Sample D Male 13.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 42.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 42.3
Samples: 4

Max nTPM: 44.2
Min nTPM: 39.1
Sample A Male 39.1
Sample B Male 44.2
Sample C Female 42.8
Sample D Female 43.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.8
71764449 Antisense, RP_050926_01_C01, Mouse strain C57BL/6J (56 days, male) 9.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.