MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:10.5 nTPM
HPA:10.5 nTPM
GTEx:11.8 nTPM
FANTOM5:65.4 Scaled Tags Per Million
Pig:98.6 nTPM
Mouse:45.0 nTPM
Allen mouse:2.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 10.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 10.0
2666 Male, age 74, left hemisphere 10.8
1833 Male, age 53, unknown 10.6
2586 Male, age 75, left hemisphere 10.5
1830 Male, age 51, unknown 10.3
2219 Male, age 76, both hemispheres 10.3
1827 Male, age 72, unknown 10.2
1870 Female, age 42, unknown 10.2
2411 Female, age 72, unknown 9.7
2828 Female, age 72, unknown 9.4
2019 Male, age 18, unknown 8.4
Dorsal raphe nucleus
nTPM: 9.6
2750 Male, age 76, both hemispheres 10.2
2047 Male, age 72, unknown 10.0
2016 Female, age 72, unknown 9.7
1828 Male, age 53, unknown 9.4
2298 Female, age 72, unknown 8.9
Inferior colliculus
nTPM: 10.3
2849 Male, age 72, unknown 10.8
1848 Female, age 42, unknown 10.5
2097 Female, age 72, unknown 10.0
1890 Male, age 53, unknown 9.7
Median raphe nucleus
nTPM: 9.9
2220 Male, age 76, midline 9.9
Pedunculopontine tegmental nucleus
nTPM: 9.8
2334 Male, age 80, both hemispheres 10.3
1921 Female, age 85, both hemispheres 9.7
2338 Male, age 61, both hemispheres 9.5
Periaquaductal grey, anterior
nTPM: 10.2
1947 Male, age 18, unknown 10.6
2502 Female, age 75, unknown 10.4
1795 Male, age 51, unknown 9.5
Periaquaductal grey, dorsal
nTPM: 10.5
1840 Male, age 53, unknown 11.2
1831 Male, age 72, unknown 10.8
2464 Female, age 72, unknown 10.3
2850 Male, age 76, both hemispheres 9.8
Periaquaductal grey, lateral
nTPM: 9.6
2053 Male, age 18, unknown 10.8
2272 Male, age 74, both hemispheres 9.1
2140 Male, age 76, both hemispheres 9.0
Pretectal area
nTPM: 9.8
2407 Male, age 75, both hemispheres 10.8
2825 Male, age 18, unknown 10.7
2316 Male, age 76, right hemisphere 10.2
1816 Male, age 51, unknown 10.1
2224 Female, age 72, unknown 10.0
1944 Female, age 72, unknown 9.9
1815 Male, age 53, unknown 9.7
2007 Male, age 72, unknown 9.5
1817 Female, age 42, unknown 9.3
2273 Male, age 74, both hemispheres 9.0
2667 Female, age 75, unknown 8.6
Red nucleus
nTPM: 9.5
2584 Male, age 75, left hemisphere 10.6
2588 Male, age 74, left hemisphere 10.0
2503 Female, age 72, unknown 9.7
2725 Female, age 75, unknown 9.7
2823 Male, age 76, right hemisphere 9.7
2227 Male, age 72, unknown 9.4
2769 Male, age 72, unknown 9.4
1865 Male, age 51, unknown 9.3
1904 Male, age 53, unknown 9.3
1954 Female, age 42, unknown 9.3
1821 Female, age 72, unknown 9.1
2785 Male, age 18, unknown 8.6
Substantia nigra
nTPM: 10.1
2665 Male, age 74, both hemispheres 11.7
2583 Male, age 75, right hemisphere 11.1
2590 Female, age 75, unknown 10.5
2241 Male, age 72, unknown 10.3
2699 Male, age 18, unknown 10.2
1916 Female, age 42, unknown 9.8
1941 Male, age 53, unknown 9.6
1851 Male, age 51, unknown 9.5
1889 Female, age 72, unknown 9.4
2409 Female, age 72, unknown 9.3
Superior colliculus
nTPM: 10.1
2664 Male, age 75, both hemispheres 11.0
2668 Female, age 75, unknown 10.7
1839 Male, age 51, unknown 10.6
2261 Male, age 18, unknown 10.3
2587 Male, age 74, left hemisphere 10.3
1796 Male, age 53, unknown 10.0
1895 Male, age 76, right hemisphere 10.0
2087 Female, age 72, unknown 9.8
1913 Female, age 42, unknown 9.4
1995 Male, age 72, unknown 9.1
Ventral tegmental area
nTPM: 9.9
2223 Female, age 72, unknown 10.5
1942 Male, age 51, unknown 10.4
2021 Male, age 53, unknown 10.4
1915 Female, age 42, unknown 9.7
2218 Male, age 76, both hemispheres 9.7
2410 Female, age 72, unknown 8.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 11.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 11.8
Samples: 139

Max nTPM: 18.5
Min nTPM: 7.9
Std nTPM: 2.1
Median nTPM: 11.5
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 18.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 17.7
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 17.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 17.2
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 16.1
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 15.9
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 15.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 15.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 15.7
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 15.0
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 14.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 65.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 65.4
FF:10158-103A5 76 years, female 65.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 98.6
Pig sample Sample description nTPM
Midbrain
nTPM: 98.6
Samples: 4

Max nTPM: 106.8
Min nTPM: 93.8
Sample A Female 98.0
Sample B Female 95.7
Sample C Male 106.8
Sample D Male 93.8
Periaqueductal gray
nTPM: 82.5
Samples: 3

Max nTPM: 100.2
Min nTPM: 72.7
Sample B Female 74.7
Sample C Male 100.2
Sample D Male 72.7
Substantia nigra
nTPM: 89.7
Samples: 4

Max nTPM: 105.0
Min nTPM: 69.6
Sample A Female 105.0
Sample B Female 81.8
Sample C Male 102.2
Sample D Male 69.6
Superior colliculi
nTPM: 83.1
Samples: 4

Max nTPM: 95.5
Min nTPM: 54.5
Sample A Female 95.5
Sample B Female 54.5
Sample C Male 94.4
Sample D Male 88.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 45.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 45.0
Samples: 4

Max nTPM: 48.0
Min nTPM: 43.1
Sample A Male 43.1
Sample B Male 45.6
Sample C Female 48.0
Sample D Female 43.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.7
71656863 Antisense, RP_050927_04_D12, Mouse strain C57BL/6J (56 days, male) 5.4
70812786 Antisense, RP_050712_02_F03, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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