BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:23.1 nTPM
HPA:23.1 nTPM
GTEx:33.4 nTPM
FANTOM5:91.0 Scaled Tags Per Million
Pig:55.9 nTPM
Mouse:66.9 nTPM
Allen mouse:6.7 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA017916
Glial cells Not detected
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 23.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 22.1
2846 Female, age 79, unknown 32.0
2290 Female, age 72, unknown 25.0
1781 Male, age 74, unknown 24.1
1854 Male, age 80, left hemisphere 21.2
2289 Male, age 61, right hemisphere 21.1
1857 Female, age 85, left hemisphere 20.6
2288 Male, age 75, left hemisphere 20.3
2481 Female, age 94, left hemisphere 12.7
Claustrum
nTPM: 19.1
2568 Male, age 61, both hemispheres 22.0
2284 Female, age 91, both hemispheres 20.4
2198 Male, age 80, both hemispheres 19.8
1956 Male, age 74, unknown 19.5
2392 Female, age 94, both hemispheres 19.5
2645 Female, age 72, unknown 19.5
2196 Female, age 79, unknown 19.2
2491 Male, age 75, both hemispheres 18.2
2292 Female, age 85, both hemispheres 14.4
Globus pallidus, externus
nTPM: 12.5
2395 Male, age 75, both hemispheres 14.2
2772 Female, age 79, unknown 12.8
2567 Female, age 72, unknown 12.7
2646 Male, age 61, right hemisphere 12.3
1996 Male, age 80, right hemisphere 10.4
Globus pallidus, internus
nTPM: 13.6
2483 Female, age 94, right hemisphere 18.3
2287 Male, age 75, right hemisphere 17.6
1818 Male, age 74, unknown 14.5
2778 Female, age 91, both hemispheres 12.7
2111 Female, age 85, right hemisphere 11.5
2566 Female, age 72, unknown 11.4
2037 Male, age 80, right hemisphere 9.2
Nucleus accumbens
nTPM: 18.6
1783 Male, age 74, unknown 23.3
1856 Female, age 91, right hemisphere 22.0
2824 Male, age 61, right hemisphere 20.7
2698 Female, age 72, unknown 20.3
2286 Male, age 75, left hemisphere 18.0
1806 Female, age 85, left hemisphere 17.5
2391 Female, age 94, left hemisphere 16.4
2732 Male, age 80, right hemisphere 10.6
Nucleus basalis of Meynert
nTPM: 18.2
2821 Male, age 75, both hemispheres 21.3
2393 Male, age 80, right hemisphere 19.8
2484 Female, age 94, left hemisphere 19.2
2569 Male, age 61, both hemispheres 12.5
Nucleus of the diagonal band
nTPM: 21.7
1812 Female, age 91, both hemispheres 26.6
2775 Male, age 80, right hemisphere 23.9
2029 Male, age 61, right hemisphere 23.4
2195 Female, age 85, both hemispheres 21.7
1979 Male, age 74, unknown 13.0
Olfactory tubercle
nTPM: 22.0
1998 Female, age 91, both hemispheres 25.0
1846 Male, age 80, right hemisphere 23.6
2487 Female, age 94, left hemisphere 21.8
2856 Male, age 75, right hemisphere 17.7
Putamen
nTPM: 23.1
2466 Female, age 79, unknown 30.2
1829 Male, age 74, unknown 27.1
1838 Male, age 80, right hemisphere 24.5
2647 Male, age 75, left hemisphere 23.2
2489 Female, age 72, unknown 22.0
1937 Female, age 91, right hemisphere 18.6
2482 Female, age 94, left hemisphere 16.1
Septal nuclei
nTPM: 18.9
2629 Female, age 94, right hemisphere 25.0
2031 Female, age 72, unknown 24.7
2009 Female, age 91, both hemispheres 24.6
1960 Male, age 74, unknown 22.1
2059 Female, age 85, both hemispheres 13.0
2199 Male, age 80, right hemisphere 12.4
2394 Male, age 61, left hemisphere 10.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 33.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 33.4
Samples: 246

Max nTPM: 85.0
Min nTPM: 11.3
Std nTPM: 16.6
Median nTPM: 29.8
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 85.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 82.4
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 82.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 73.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 71.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 69.2
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 68.2
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 68.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 67.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 66.6
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 66.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 32.3
Samples: 246

Max nTPM: 73.3
Min nTPM: 3.9
Std nTPM: 12.7
Median nTPM: 33.3
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 73.3
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 62.9
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 62.6
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 59.9
GTEX-1F6IF-0011-R6a-SM-9QEIO 60-69 years, male 59.7
GTEX-WHSE-0011-R6A-SM-3P5ZP 20-29 years, male 59.3
GTEX-14JIY-0011-R6b-SM-68714 60-69 years, male 56.5
GTEX-17EVP-0011-R6b-SM-7LT99 40-49 years, male 55.7
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 55.3
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 54.9
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 54.7
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Brain - Putamen (basal ganglia)
Average nTPM: 30.8
Samples: 205

Max nTPM: 96.1
Min nTPM: 10.7
Std nTPM: 14.2
Median nTPM: 25.8
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 96.1
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 73.5
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 64.7
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 62.1
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 62.0
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 61.9
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 59.0
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 58.8
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 58.7
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 58.5
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 55.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 91.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 65.9
FF:10164-103B2 76 years, female 65.9
Globus pallidus
Scaled Tags Per Million: 58.5
FF:10175-103C4 60 years, female 65.5
FF:10161-103A8 76 years, female 51.4
Nucleus accumbens
Scaled Tags Per Million: 91.0
FF:10037-101F1 23-56 years, mixed 91.0
Putamen
Scaled Tags Per Million: 81.0
FF:10176-103C5 60 years, female 81.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 55.9
Pig sample Sample description nTPM
Caudate
nTPM: 49.6
Samples: 4

Max nTPM: 59.1
Min nTPM: 39.5
Sample A Female 39.5
Sample B Female 48.3
Sample C Male 59.1
Sample D Male 51.5
Putamen
nTPM: 56.0
Samples: 4

Max nTPM: 72.3
Min nTPM: 33.6
Sample A Female 33.6
Sample B Female 56.3
Sample C Male 72.3
Sample D Male 61.6
Septum
nTPM: 39.0
Samples: 4

Max nTPM: 46.2
Min nTPM: 29.2
Sample A Female 42.5
Sample B Female 37.9
Sample C Male 46.2
Sample D Male 29.2
Ventral pallidum
nTPM: 41.8
Samples: 4

Max nTPM: 47.2
Min nTPM: 37.9
Sample A Female 43.4
Sample B Female 38.8
Sample C Male 47.2
Sample D Male 37.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 66.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 66.9
Samples: 4

Max nTPM: 69.1
Min nTPM: 63.8
Sample A Male 69.1
Sample B Male 68.6
Sample C Female 63.8
Sample D Female 66.1
Septum
nTPM: 54.9
Samples: 4

Max nTPM: 55.8
Min nTPM: 53.6
Sample A Male 55.8
Sample B Male 55.7
Sample C Female 54.3
Sample D Female 53.6
Ventral forebrain
nTPM: 58.2
Samples: 4

Max nTPM: 61.2
Min nTPM: 56.0
Sample A Male 56.0
Sample B Male 57.5
Sample C Female 61.2
Sample D Female 58.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 6.7
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 6.7
68445197 Antisense, RP_050113_01_A01, Mouse strain C57BL/6J (56 days, male) 13.4
1514 Antisense, RP_Baylor_253941, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 5.6
68445197 Antisense, RP_050113_01_A01, Mouse strain C57BL/6J (56 days, male) 11.1
1514 Antisense, RP_Baylor_253941, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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