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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:151.9 nTPM
HPA:151.9 nTPM
GTEx:150.6 nTPM
FANTOM5:77.2 Scaled Tags Per Million
Pig:36.6 nTPM
Mouse:23.3 nTPM
Allen mouse:1.7 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 151.9
Sample id Sample description nTPM
Amygdala
nTPM: 151.9
2514 Male, age 75, right hemisphere 155.6
2695 Female, age 67, right hemisphere 153.6
1987 Female, age 91, left hemisphere 150.6
2814 Male, age 76, right hemisphere 150.0
2517 Female, age 94, left hemisphere 149.9
Basal amygdala
nTPM: 146.0
2110 Male, age 80, left hemisphere 150.1
2609 Male, age 75, right hemisphere 149.5
1955 Male, age 76, both hemispheres 148.6
2685 Female, age 94, left hemisphere 145.0
2243 Female, age 91, right hemisphere 144.2
2827 Female, age 67, right hemisphere 138.8
Central amygdala
nTPM: 148.1
2826 Female, age 94, left hemisphere 151.2
1905 Male, age 76, both hemispheres 150.1
2515 Male, age 75, right hemisphere 149.7
2239 Male, age 80, left hemisphere 148.3
2701 Female, age 91, right hemisphere 141.1
Corticomedial amygdala
nTPM: 146.7
2428 Male, age 75, right hemisphere 151.3
2829 Male, age 80, left hemisphere 150.3
2240 Male, age 76, both hemispheres 147.2
2429 Female, age 94, left hemisphere 147.1
2242 Female, age 91, right hemisphere 144.0
2535 Female, age 67, right hemisphere 140.6
Lateral amygdala
nTPM: 148.4
2534 Female, age 94, left hemisphere 154.3
2516 Male, age 75, right hemisphere 152.8
1883 Male, age 76, both hemispheres 148.9
2256 Male, age 80, left hemisphere 146.6
2830 Female, age 67, right hemisphere 145.7
2255 Female, age 91, right hemisphere 142.2
Stria terminalis, bed nucleus
nTPM: 145.9
1974 Female, age 91, both hemispheres 147.8
2201 Male, age 74, unknown 145.4
2486 Female, age 94, both hemispheres 144.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 150.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 150.6
Samples: 152

Max nTPM: 345.6
Min nTPM: 84.7
Std nTPM: 43.9
Median nTPM: 145.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 345.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 340.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 299.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 297.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 286.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 283.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 279.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 243.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 224.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 218.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 213.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 208.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 205.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 201.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 195.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 192.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 189.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 187.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 185.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 180.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 180.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 175.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 175.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 174.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 174.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 173.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 169.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 169.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 169.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 168.1
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 167.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 165.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 165.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 164.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 163.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 160.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 160.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 160.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 160.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 160.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 159.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 158.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 158.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 157.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 155.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 155.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 155.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 154.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 154.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 154.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 153.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 153.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 153.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 152.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 151.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 151.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 151.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 151.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 150.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 150.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 150.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 149.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 149.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 148.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 147.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 147.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 147.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 147.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 146.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 146.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 146.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 146.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 145.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 145.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 145.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 145.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 144.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 143.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 142.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 142.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 142.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 140.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 140.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 140.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 139.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 139.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 139.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 138.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 138.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 136.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 136.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 135.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 135.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 135.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 134.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 134.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 134.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 133.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 132.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 131.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 131.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 131.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 131.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 128.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 128.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 127.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 127.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 126.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 126.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 125.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 125.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 125.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 125.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 125.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 124.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 124.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 124.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 123.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 123.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 123.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 123.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 121.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 121.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 120.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 120.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 119.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 119.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 118.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 117.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 116.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 116.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 114.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 113.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 112.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 112.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 112.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 111.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 110.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 109.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 106.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 103.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 103.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 102.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 101.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 99.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 98.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 97.5
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 94.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 94.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 91.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 91.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 84.7
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 77.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 77.2
FF:10151-102I7 76 years, female 77.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 36.6
Pig sample Sample description nTPM
Amygdala
nTPM: 36.6
Samples: 4

Max nTPM: 49.7
Min nTPM: 28.7
Sample A Female 49.7
Sample B Female 37.5
Sample C Male 28.7
Sample D Male 30.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 23.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 23.3
Samples: 4

Max nTPM: 26.7
Min nTPM: 20.1
Sample A Male 20.1
Sample B Male 21.5
Sample C Female 26.7
Sample D Female 25.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 1.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 1.7
69838600 Antisense, RP_050310_02_B08, Mouse strain C57BL/6J (56 days, male) 3.2
74819685 Antisense, RP_060315_02_H01, Mouse strain C57BL/6J (56 days, male) 0.1

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