BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:3.5 nTPM
HPA:3.5 nTPM
GTEx:3.1 nTPM
FANTOM5:8.8 Scaled Tags Per Million
Pig:2.4 nTPM
Mouse:1.9 nTPM
Allen mouse:0.0 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

CAUDATE - Antibody stainingi
Antibody HPA014394
Glial cells Low
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 3.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 3.4
2481 Female, age 94, left hemisphere 3.8
2846 Female, age 79, unknown 3.7
2288 Male, age 75, left hemisphere 3.6
1857 Female, age 85, left hemisphere 3.5
1854 Male, age 80, left hemisphere 3.3
2290 Female, age 72, unknown 3.3
1781 Male, age 74, unknown 3.1
2289 Male, age 61, right hemisphere 3.1
Claustrum
nTPM: 3.0
2392 Female, age 94, both hemispheres 3.4
1956 Male, age 74, unknown 3.3
2292 Female, age 85, both hemispheres 3.1
2196 Female, age 79, unknown 3.0
2491 Male, age 75, both hemispheres 3.0
2198 Male, age 80, both hemispheres 2.8
2284 Female, age 91, both hemispheres 2.8
2568 Male, age 61, both hemispheres 2.7
2645 Female, age 72, unknown 2.7
Globus pallidus, externus
nTPM: 3.2
2395 Male, age 75, both hemispheres 3.8
1996 Male, age 80, right hemisphere 3.4
2646 Male, age 61, right hemisphere 3.1
2772 Female, age 79, unknown 3.1
2567 Female, age 72, unknown 2.6
Globus pallidus, internus
nTPM: 3.5
2483 Female, age 94, right hemisphere 3.9
2111 Female, age 85, right hemisphere 3.8
1818 Male, age 74, unknown 3.5
2037 Male, age 80, right hemisphere 3.5
2287 Male, age 75, right hemisphere 3.5
2778 Female, age 91, both hemispheres 3.5
2566 Female, age 72, unknown 2.8
Nucleus accumbens
nTPM: 3.4
2286 Male, age 75, left hemisphere 3.9
2391 Female, age 94, left hemisphere 3.7
2732 Male, age 80, right hemisphere 3.4
1783 Male, age 74, unknown 3.3
1806 Female, age 85, left hemisphere 3.3
1856 Female, age 91, right hemisphere 3.3
2698 Female, age 72, unknown 3.3
2824 Male, age 61, right hemisphere 3.2
Nucleus basalis of Meynert
nTPM: 3.3
2484 Female, age 94, left hemisphere 3.6
2393 Male, age 80, right hemisphere 3.4
2569 Male, age 61, both hemispheres 3.1
2821 Male, age 75, both hemispheres 3.1
Nucleus of the diagonal band
nTPM: 3.0
1812 Female, age 91, both hemispheres 3.4
1979 Male, age 74, unknown 3.0
2195 Female, age 85, both hemispheres 3.0
2775 Male, age 80, right hemisphere 3.0
2029 Male, age 61, right hemisphere 2.9
Olfactory tubercle
nTPM: 3.1
1846 Male, age 80, right hemisphere 3.5
2856 Male, age 75, right hemisphere 3.2
1998 Female, age 91, both hemispheres 3.0
2487 Female, age 94, left hemisphere 2.9
Putamen
nTPM: 3.4
2482 Female, age 94, left hemisphere 4.1
1829 Male, age 74, unknown 3.6
2466 Female, age 79, unknown 3.5
1937 Female, age 91, right hemisphere 3.3
1838 Male, age 80, right hemisphere 3.2
2489 Female, age 72, unknown 3.2
2647 Male, age 75, left hemisphere 2.9
Septal nuclei
nTPM: 3.1
2009 Female, age 91, both hemispheres 3.2
2199 Male, age 80, right hemisphere 3.2
2629 Female, age 94, right hemisphere 3.2
2031 Female, age 72, unknown 3.1
1960 Male, age 74, unknown 3.0
2059 Female, age 85, both hemispheres 3.0
2394 Male, age 61, left hemisphere 3.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 3.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 3.1
Samples: 246

Max nTPM: 6.6
Min nTPM: 1.4
Std nTPM: 0.7
Median nTPM: 3.0
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 6.6
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 6.2
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 5.8
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 5.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 5.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 5.4
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 5.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 5.3
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 5.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 4.8
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 4.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 3.1
Samples: 246

Max nTPM: 6.7
Min nTPM: 1.0
Std nTPM: 0.7
Median nTPM: 3.0
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 6.7
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 6.5
GTEX-11WQC-0011-R6a-SM-5BC77 60-69 years, male 6.1
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 5.5
GTEX-ZVZQ-0011-R6b-SM-57WAY 60-69 years, female 5.5
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 4.8
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 4.7
GTEX-132Q8-0011-R6a-SM-5K7YN 60-69 years, male 4.6
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 4.5
GTEX-1I1GS-0011-R6b-SM-CMKHE 60-69 years, male 4.4
GTEX-QVUS-0011-R6A-SM-3GACX 60-69 years, female 4.3
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Brain - Putamen (basal ganglia)
Average nTPM: 2.8
Samples: 205

Max nTPM: 6.4
Min nTPM: 1.4
Std nTPM: 0.6
Median nTPM: 2.7
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 6.4
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 6.2
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 4.8
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 4.7
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 4.6
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 4.4
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 4.3
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 4.2
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 4.1
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 4.1
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 4.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 8.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 7.6
FF:10164-103B2 76 years, female 7.6
Globus pallidus
Scaled Tags Per Million: 6.4
FF:10161-103A8 76 years, female 9.7
FF:10175-103C4 60 years, female 3.1
Nucleus accumbens
Scaled Tags Per Million: 8.8
FF:10037-101F1 23-56 years, mixed 8.8
Putamen
Scaled Tags Per Million: 7.8
FF:10176-103C5 60 years, female 7.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 2.4
Pig sample Sample description nTPM
Caudate
nTPM: 2.2
Samples: 4

Max nTPM: 2.3
Min nTPM: 1.9
Sample A Female 2.3
Sample B Female 1.9
Sample C Male 2.2
Sample D Male 2.3
Putamen
nTPM: 2.4
Samples: 4

Max nTPM: 2.5
Min nTPM: 2.2
Sample A Female 2.5
Sample B Female 2.4
Sample C Male 2.3
Sample D Male 2.2
Septum
nTPM: 2.1
Samples: 4

Max nTPM: 2.3
Min nTPM: 1.7
Sample A Female 2.2
Sample B Female 2.3
Sample C Male 1.7
Sample D Male 2.1
Ventral pallidum
nTPM: 2.3
Samples: 4

Max nTPM: 2.6
Min nTPM: 1.8
Sample A Female 2.4
Sample B Female 2.3
Sample C Male 1.8
Sample D Male 2.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 1.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 1.7
Samples: 4

Max nTPM: 1.8
Min nTPM: 1.5
Sample A Male 1.8
Sample B Male 1.5
Sample C Female 1.8
Sample D Female 1.7
Septum
nTPM: 1.9
Samples: 4

Max nTPM: 2.4
Min nTPM: 1.4
Sample A Male 1.4
Sample B Male 1.6
Sample C Female 2.0
Sample D Female 2.4
Ventral forebrain
nTPM: 1.4
Samples: 4

Max nTPM: 1.6
Min nTPM: 1.1
Sample A Male 1.5
Sample B Male 1.2
Sample C Female 1.1
Sample D Female 1.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
68162216 Antisense, RP_041122_01_H04, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
68162216 Antisense, RP_041122_01_H04, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

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