MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:79.4 nTPM
HPA:79.4 nTPM
GTEx:54.9 nTPM
FANTOM5:242.5 Scaled Tags Per Million
Pig:33.7 nTPM
Mouse:30.3 nTPM
Allen mouse:1.7 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 79.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 67.7
2586 Male, age 75, left hemisphere 94.6
1833 Male, age 53, unknown 72.7
2828 Female, age 72, unknown 72.3
1830 Male, age 51, unknown 71.7
2019 Male, age 18, unknown 70.1
2666 Male, age 74, left hemisphere 66.6
2411 Female, age 72, unknown 63.1
1827 Male, age 72, unknown 58.9
1870 Female, age 42, unknown 58.5
2219 Male, age 76, both hemispheres 48.6
Dorsal raphe nucleus
nTPM: 52.4
2750 Male, age 76, both hemispheres 68.2
1828 Male, age 53, unknown 57.3
2016 Female, age 72, unknown 50.2
2047 Male, age 72, unknown 46.7
2298 Female, age 72, unknown 39.7
Inferior colliculus
nTPM: 47.9
2849 Male, age 72, unknown 50.8
1890 Male, age 53, unknown 50.4
1848 Female, age 42, unknown 48.7
2097 Female, age 72, unknown 41.4
Median raphe nucleus
nTPM: 42.6
2220 Male, age 76, midline 42.6
Pedunculopontine tegmental nucleus
nTPM: 49.4
2334 Male, age 80, both hemispheres 51.5
2338 Male, age 61, both hemispheres 49.7
1921 Female, age 85, both hemispheres 46.9
Periaquaductal grey, anterior
nTPM: 51.5
2502 Female, age 75, unknown 57.1
1795 Male, age 51, unknown 49.9
1947 Male, age 18, unknown 47.5
Periaquaductal grey, dorsal
nTPM: 43.4
2464 Female, age 72, unknown 52.9
1831 Male, age 72, unknown 47.6
1840 Male, age 53, unknown 39.6
2850 Male, age 76, both hemispheres 33.5
Periaquaductal grey, lateral
nTPM: 46.5
2053 Male, age 18, unknown 52.4
2272 Male, age 74, both hemispheres 48.3
2140 Male, age 76, both hemispheres 38.6
Pretectal area
nTPM: 56.6
2407 Male, age 75, both hemispheres 73.8
2316 Male, age 76, right hemisphere 65.1
1815 Male, age 53, unknown 64.3
1816 Male, age 51, unknown 59.9
1817 Female, age 42, unknown 57.8
2007 Male, age 72, unknown 57.2
1944 Female, age 72, unknown 56.9
2667 Female, age 75, unknown 52.2
2825 Male, age 18, unknown 52.1
2224 Female, age 72, unknown 41.8
2273 Male, age 74, both hemispheres 41.1
Red nucleus
nTPM: 79.4
2584 Male, age 75, left hemisphere 94.1
2823 Male, age 76, right hemisphere 93.9
1904 Male, age 53, unknown 86.8
2227 Male, age 72, unknown 81.1
2769 Male, age 72, unknown 79.7
2588 Male, age 74, left hemisphere 79.0
2785 Male, age 18, unknown 78.5
1865 Male, age 51, unknown 76.0
2503 Female, age 72, unknown 74.0
2725 Female, age 75, unknown 71.7
1821 Female, age 72, unknown 69.1
1954 Female, age 42, unknown 68.3
Substantia nigra
nTPM: 57.2
2583 Male, age 75, right hemisphere 88.6
2590 Female, age 75, unknown 61.4
1851 Male, age 51, unknown 59.4
2699 Male, age 18, unknown 58.3
1889 Female, age 72, unknown 55.6
2409 Female, age 72, unknown 54.4
1916 Female, age 42, unknown 51.6
2665 Male, age 74, both hemispheres 50.3
1941 Male, age 53, unknown 47.3
2241 Male, age 72, unknown 44.8
Superior colliculus
nTPM: 65.0
1995 Male, age 72, unknown 79.7
1913 Female, age 42, unknown 77.0
2664 Male, age 75, both hemispheres 73.7
1895 Male, age 76, right hemisphere 64.9
2668 Female, age 75, unknown 62.0
2261 Male, age 18, unknown 60.1
2087 Female, age 72, unknown 59.5
1796 Male, age 53, unknown 59.4
1839 Male, age 51, unknown 57.9
2587 Male, age 74, left hemisphere 55.7
Ventral tegmental area
nTPM: 57.1
2223 Female, age 72, unknown 70.9
2410 Female, age 72, unknown 63.4
1942 Male, age 51, unknown 54.8
1915 Female, age 42, unknown 53.5
2218 Male, age 76, both hemispheres 51.4
2021 Male, age 53, unknown 48.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 54.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 54.9
Samples: 139

Max nTPM: 168.4
Min nTPM: 24.6
Std nTPM: 20.6
Median nTPM: 50.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 168.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 149.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 122.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 114.0
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 113.5
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 91.2
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 89.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 87.7
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 82.5
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 81.6
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 81.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 242.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 242.5
FF:10158-103A5 76 years, female 242.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 33.7
Pig sample Sample description nTPM
Midbrain
nTPM: 32.9
Samples: 4

Max nTPM: 41.9
Min nTPM: 29.7
Sample A Female 41.9
Sample B Female 29.9
Sample C Male 29.9
Sample D Male 29.7
Periaqueductal gray
nTPM: 27.8
Samples: 3

Max nTPM: 28.4
Min nTPM: 26.8
Sample B Female 28.4
Sample C Male 28.3
Sample D Male 26.8
Substantia nigra
nTPM: 33.8
Samples: 4

Max nTPM: 38.4
Min nTPM: 23.8
Sample A Female 36.3
Sample B Female 23.8
Sample C Male 36.5
Sample D Male 38.4
Superior colliculi
nTPM: 28.7
Samples: 4

Max nTPM: 34.2
Min nTPM: 22.9
Sample A Female 34.2
Sample B Female 22.9
Sample C Male 26.0
Sample D Male 31.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 30.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 30.3
Samples: 4

Max nTPM: 32.8
Min nTPM: 27.5
Sample A Male 32.8
Sample B Male 27.5
Sample C Female 29.5
Sample D Female 31.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.7
75826580 Antisense, RP_060601_01_B10, Mouse strain C57BL/6J (56 days, male) 1.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.