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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:32.9 nTPM
HPA:32.9 nTPM
GTEx:86.0 nTPM
FANTOM5:186.1 Scaled Tags Per Million

AMYGDALA - HPA Brain RNA-seq
Max nTPM 32.9
Sample id Sample description nTPM
Amygdala
nTPM: 8.0
2517 Female, age 94, left hemisphere 20.7
1987 Female, age 91, left hemisphere 16.0
2514 Male, age 75, right hemisphere 3.3
2695 Female, age 67, right hemisphere 0.0
2814 Male, age 76, right hemisphere 0.0
Basal amygdala
nTPM: 29.6
2243 Female, age 91, right hemisphere 61.6
2685 Female, age 94, left hemisphere 51.5
2110 Male, age 80, left hemisphere 24.4
2827 Female, age 67, right hemisphere 18.3
1955 Male, age 76, both hemispheres 12.2
2609 Male, age 75, right hemisphere 9.8
Central amygdala
nTPM: 23.5
2826 Female, age 94, left hemisphere 41.2
2239 Male, age 80, left hemisphere 38.9
2701 Female, age 91, right hemisphere 25.8
2515 Male, age 75, right hemisphere 11.9
1905 Male, age 76, both hemispheres 0.0
Corticomedial amygdala
nTPM: 30.9
2242 Female, age 91, right hemisphere 63.1
2829 Male, age 80, left hemisphere 35.5
2535 Female, age 67, right hemisphere 35.0
2429 Female, age 94, left hemisphere 30.0
2240 Male, age 76, both hemispheres 17.6
2428 Male, age 75, right hemisphere 3.8
Lateral amygdala
nTPM: 23.4
2534 Female, age 94, left hemisphere 56.4
2256 Male, age 80, left hemisphere 44.7
2255 Female, age 91, right hemisphere 39.4
1883 Male, age 76, both hemispheres 0.0
2516 Male, age 75, right hemisphere 0.0
2830 Female, age 67, right hemisphere 0.0
Stria terminalis, bed nucleus
nTPM: 32.9
2486 Female, age 94, both hemispheres 43.0
1974 Female, age 91, both hemispheres 33.3
2201 Male, age 74, unknown 22.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 86.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 86.0
Samples: 152

Max nTPM: 194.8
Min nTPM: 11.8
Std nTPM: 36.4
Median nTPM: 82.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 194.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 188.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 186.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 177.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 155.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 151.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 150.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 148.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 144.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 142.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 140.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 138.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 135.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 135.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 135.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 134.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 132.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 129.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 129.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 125.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 125.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 124.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 124.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 124.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 124.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 122.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 120.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 119.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 119.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 119.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 119.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 115.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 115.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 114.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 113.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 112.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 112.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 108.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 106.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 106.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 106.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 106.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 104.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 104.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 104.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 102.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 102.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 102.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 102.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 102.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 100.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 99.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 98.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 98.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 98.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 97.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 97.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 97.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 95.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 95.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 94.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 94.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 92.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 91.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 91.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 90.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 90.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 89.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 86.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 85.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 85.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 84.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 84.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 84.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 84.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 83.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 81.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 81.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 81.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 81.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 81.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 80.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 79.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 78.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 78.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 78.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 77.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 76.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 76.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 75.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 75.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 75.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 75.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 74.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 73.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 72.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 72.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 71.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 70.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 69.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 69.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 69.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 68.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 67.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 65.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 63.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 62.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 62.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 61.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 61.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 61.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 60.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 60.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 60.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 60.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 59.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 56.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 56.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 55.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 53.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 51.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 48.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 48.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 48.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 47.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 47.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 46.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 46.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 46.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 46.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 45.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 45.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 45.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 45.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 45.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 44.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 42.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 40.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 40.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 39.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 38.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 37.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 37.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 35.1
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 33.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 33.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 30.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 23.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 21.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 15.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 13.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 11.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 186.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 186.1
FF:10151-102I7 76 years, female 186.1

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