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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:67.9 nTPM
HPA:67.9 nTPM
GTEx:75.7 nTPM
FANTOM5:35.7 Scaled Tags Per Million
Pig:55.8 nTPM
Mouse:199.2 nTPM
Allen mouse:13.6 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max nTPM 67.9
Sample id Sample description nTPM
Amygdala
nTPM: 53.5
2517 Female, age 94, left hemisphere 60.5
1987 Female, age 91, left hemisphere 57.8
2514 Male, age 75, right hemisphere 52.6
2695 Female, age 67, right hemisphere 48.6
2814 Male, age 76, right hemisphere 48.1
Basal amygdala
nTPM: 67.9
2243 Female, age 91, right hemisphere 78.0
2685 Female, age 94, left hemisphere 70.5
2827 Female, age 67, right hemisphere 70.3
2110 Male, age 80, left hemisphere 65.7
2609 Male, age 75, right hemisphere 64.1
1955 Male, age 76, both hemispheres 58.5
Central amygdala
nTPM: 59.3
2826 Female, age 94, left hemisphere 71.0
2239 Male, age 80, left hemisphere 64.5
2701 Female, age 91, right hemisphere 55.8
2515 Male, age 75, right hemisphere 55.2
1905 Male, age 76, both hemispheres 50.2
Corticomedial amygdala
nTPM: 67.3
2829 Male, age 80, left hemisphere 77.5
2242 Female, age 91, right hemisphere 69.6
2535 Female, age 67, right hemisphere 68.9
2429 Female, age 94, left hemisphere 65.5
2428 Male, age 75, right hemisphere 63.1
2240 Male, age 76, both hemispheres 58.9
Lateral amygdala
nTPM: 62.5
2534 Female, age 94, left hemisphere 81.5
2256 Male, age 80, left hemisphere 69.9
2255 Female, age 91, right hemisphere 60.5
2830 Female, age 67, right hemisphere 56.8
1883 Male, age 76, both hemispheres 54.0
2516 Male, age 75, right hemisphere 52.5
Stria terminalis, bed nucleus
nTPM: 64.4
2486 Female, age 94, both hemispheres 68.8
1974 Female, age 91, both hemispheres 68.2
2201 Male, age 74, unknown 56.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 75.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 75.7
Samples: 152

Max nTPM: 286.5
Min nTPM: 3.7
Std nTPM: 35.6
Median nTPM: 68.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 286.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 189.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 168.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 157.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 154.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 148.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 142.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 133.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 132.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 127.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 126.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 123.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 118.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 116.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 114.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 113.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 113.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 111.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 110.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 110.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 110.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 109.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 107.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 107.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 105.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 104.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 103.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 103.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 102.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 102.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 101.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 99.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 99.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 99.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 94.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 94.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 93.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 92.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 91.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 91.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 90.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 89.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 88.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 87.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 87.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 86.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 85.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 84.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 84.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 83.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 83.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 83.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 83.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 82.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 82.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 82.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 81.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 81.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 81.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 80.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 80.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 80.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 79.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 78.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 75.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 75.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 75.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 74.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 73.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 72.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 71.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 71.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 70.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 70.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 68.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 68.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 68.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 68.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 67.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 67.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 67.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 67.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 66.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 66.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 65.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 65.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 65.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 64.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 63.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 63.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 61.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 61.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 59.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 59.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 58.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 58.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 58.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 58.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 58.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 58.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 57.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 57.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 57.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 57.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 56.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 56.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 56.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 56.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 56.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 55.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 55.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 54.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 54.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 54.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 54.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 54.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 53.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 53.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 52.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 51.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 51.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 51.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 50.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 49.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 49.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 47.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 47.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 43.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 43.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 42.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 42.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 41.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 40.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 40.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 40.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 40.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 39.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 39.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 38.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 37.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 37.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 35.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 35.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 34.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 34.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 33.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 32.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 25.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 20.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 11.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 10.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 3.7
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 35.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 35.7
FF:10151-102I7 76 years, female 35.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 55.8
Pig sample Sample description nTPM
Amygdala
nTPM: 55.8
Samples: 4

Max nTPM: 76.3
Min nTPM: 37.7
Sample A Female 76.3
Sample B Female 37.7
Sample C Male 51.6
Sample D Male 57.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 199.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 199.2
Samples: 4

Max nTPM: 227.0
Min nTPM: 178.7
Sample A Male 178.7
Sample B Male 205.2
Sample C Female 227.0
Sample D Female 185.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 13.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 13.6
69236939 Antisense, RP_050331_01_E04, Mouse strain C57BL/6J (56 days, male) 13.6
70560340 Antisense, RP_050331_01_E04, Mouse strain C57BL/6J (56 days, male) 13.1

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