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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:803.3 nTPM
HPA:803.3 nTPM
GTEx:645.9 nTPM
FANTOM5:903.7 Scaled Tags Per Million
Mouse:2143.0 nTPM
Allen mouse:40.9 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 803.3
Sample id Sample description nTPM
Amygdala
nTPM: 803.3
2814 Male, age 76, right hemisphere 851.8
1987 Female, age 91, left hemisphere 818.6
2514 Male, age 75, right hemisphere 811.5
2695 Female, age 67, right hemisphere 768.9
2517 Female, age 94, left hemisphere 765.6
Basal amygdala
nTPM: 716.8
2110 Male, age 80, left hemisphere 748.7
1955 Male, age 76, both hemispheres 747.7
2609 Male, age 75, right hemisphere 747.6
2685 Female, age 94, left hemisphere 731.2
2827 Female, age 67, right hemisphere 663.1
2243 Female, age 91, right hemisphere 662.5
Central amygdala
nTPM: 776.3
1905 Male, age 76, both hemispheres 837.6
2515 Male, age 75, right hemisphere 831.7
2239 Male, age 80, left hemisphere 791.2
2826 Female, age 94, left hemisphere 715.4
2701 Female, age 91, right hemisphere 705.3
Corticomedial amygdala
nTPM: 733.5
2428 Male, age 75, right hemisphere 781.4
2429 Female, age 94, left hemisphere 766.5
2240 Male, age 76, both hemispheres 760.5
2829 Male, age 80, left hemisphere 727.4
2242 Female, age 91, right hemisphere 708.2
2535 Female, age 67, right hemisphere 656.6
Lateral amygdala
nTPM: 743.2
1883 Male, age 76, both hemispheres 800.2
2256 Male, age 80, left hemisphere 780.0
2516 Male, age 75, right hemisphere 760.3
2534 Female, age 94, left hemisphere 728.9
2830 Female, age 67, right hemisphere 700.6
2255 Female, age 91, right hemisphere 688.9
Stria terminalis, bed nucleus
nTPM: 743.2
1974 Female, age 91, both hemispheres 756.5
2201 Male, age 74, unknown 753.7
2486 Female, age 94, both hemispheres 719.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 645.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 645.9
Samples: 152

Max nTPM: 2030.3
Min nTPM: 141.8
Std nTPM: 225.0
Median nTPM: 622.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 2030.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1456.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1263.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 1191.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 1188.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 1136.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1048.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 944.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 922.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 922.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 899.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 898.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 892.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 891.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 871.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 865.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 862.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 856.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 850.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 844.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 839.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 832.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 832.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 827.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 826.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 826.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 817.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 785.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 782.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 781.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 775.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 771.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 770.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 767.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 760.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 752.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 752.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 745.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 742.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 731.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 724.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 719.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 718.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 716.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 714.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 709.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 708.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 706.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 705.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 687.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 686.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 686.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 676.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 674.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 672.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 670.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 669.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 663.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 663.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 659.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 659.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 655.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 653.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 653.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 652.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 649.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 646.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 643.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 642.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 640.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 639.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 639.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 637.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 637.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 623.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 623.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 621.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 614.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 610.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 609.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 604.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 600.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 600.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 598.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 591.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 591.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 587.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 587.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 587.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 581.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 580.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 580.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 576.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 575.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 569.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 569.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 568.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 568.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 567.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 561.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 560.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 558.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 554.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 553.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 545.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 542.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 540.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 536.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 536.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 534.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 533.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 530.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 524.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 516.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 516.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 513.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 505.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 503.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 498.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 495.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 493.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 491.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 485.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 481.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 475.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 473.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 470.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 461.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 460.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 459.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 458.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 444.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 440.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 430.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 428.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 409.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 407.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 406.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 400.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 388.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 383.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 381.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 367.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 365.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 357.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 355.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 331.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 318.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 318.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 253.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 233.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 141.8
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 903.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 903.7
FF:10151-102I7 76 years, female 903.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 2143.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 2143.0
Samples: 4

Max nTPM: 2270.8
Min nTPM: 1909.5
Sample A Male 2270.8
Sample B Male 2242.9
Sample C Female 1909.5
Sample D Female 2148.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 40.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 40.9
68844164 Antisense, RP_050222_01_A07, Mouse strain C57BL/6J (56 days, male) 40.9

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