MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:1002.4 nTPM
HPA:1002.4 nTPM
GTEx:1093.7 nTPM
FANTOM5:2112.1 Scaled Tags Per Million
Mouse:1570.0 nTPM
Allen mouse:34.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 1002.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 866.2
2411 Female, age 72, unknown 1049.9
1870 Female, age 42, unknown 978.6
1830 Male, age 51, unknown 891.6
1833 Male, age 53, unknown 871.8
2219 Male, age 76, both hemispheres 860.8
2019 Male, age 18, unknown 857.0
2828 Female, age 72, unknown 828.1
1827 Male, age 72, unknown 821.9
2586 Male, age 75, left hemisphere 776.6
2666 Male, age 74, left hemisphere 725.9
Dorsal raphe nucleus
nTPM: 905.6
2750 Male, age 76, both hemispheres 1070.1
2298 Female, age 72, unknown 946.7
2047 Male, age 72, unknown 859.1
1828 Male, age 53, unknown 839.3
2016 Female, age 72, unknown 812.5
Inferior colliculus
nTPM: 757.3
2097 Female, age 72, unknown 791.4
1848 Female, age 42, unknown 754.9
1890 Male, age 53, unknown 744.6
2849 Male, age 72, unknown 738.2
Median raphe nucleus
nTPM: 934.2
2220 Male, age 76, midline 934.2
Pedunculopontine tegmental nucleus
nTPM: 1002.4
2338 Male, age 61, both hemispheres 1131.0
2334 Male, age 80, both hemispheres 973.2
1921 Female, age 85, both hemispheres 903.2
Periaquaductal grey, anterior
nTPM: 832.5
1795 Male, age 51, unknown 835.3
2502 Female, age 75, unknown 833.5
1947 Male, age 18, unknown 828.8
Periaquaductal grey, dorsal
nTPM: 782.7
2850 Male, age 76, both hemispheres 844.8
2464 Female, age 72, unknown 785.9
1831 Male, age 72, unknown 766.6
1840 Male, age 53, unknown 733.4
Periaquaductal grey, lateral
nTPM: 833.1
2272 Male, age 74, both hemispheres 880.6
2053 Male, age 18, unknown 815.7
2140 Male, age 76, both hemispheres 802.9
Pretectal area
nTPM: 825.7
2273 Male, age 74, both hemispheres 947.9
2224 Female, age 72, unknown 856.3
2825 Male, age 18, unknown 847.6
1815 Male, age 53, unknown 844.2
2407 Male, age 75, both hemispheres 836.6
2667 Female, age 75, unknown 830.5
2316 Male, age 76, right hemisphere 822.9
2007 Male, age 72, unknown 806.7
1817 Female, age 42, unknown 789.1
1816 Male, age 51, unknown 754.3
1944 Female, age 72, unknown 747.0
Red nucleus
nTPM: 893.1
1821 Female, age 72, unknown 1008.0
1865 Male, age 51, unknown 964.5
1904 Male, age 53, unknown 959.7
2227 Male, age 72, unknown 926.8
2769 Male, age 72, unknown 912.9
1954 Female, age 42, unknown 908.8
2785 Male, age 18, unknown 880.5
2823 Male, age 76, right hemisphere 877.9
2503 Female, age 72, unknown 870.8
2588 Male, age 74, left hemisphere 816.4
2725 Female, age 75, unknown 808.5
2584 Male, age 75, left hemisphere 782.3
Substantia nigra
nTPM: 884.1
1916 Female, age 42, unknown 1039.8
1851 Male, age 51, unknown 986.2
1941 Male, age 53, unknown 922.3
2241 Male, age 72, unknown 914.9
2699 Male, age 18, unknown 903.6
2590 Female, age 75, unknown 894.1
2409 Female, age 72, unknown 868.6
1889 Female, age 72, unknown 838.2
2583 Male, age 75, right hemisphere 785.5
2665 Male, age 74, both hemispheres 687.7
Superior colliculus
nTPM: 832.7
1913 Female, age 42, unknown 956.9
2587 Male, age 74, left hemisphere 912.7
2668 Female, age 75, unknown 874.2
1995 Male, age 72, unknown 858.8
1796 Male, age 53, unknown 821.7
2261 Male, age 18, unknown 798.8
1839 Male, age 51, unknown 795.3
1895 Male, age 76, right hemisphere 784.1
2664 Male, age 75, both hemispheres 776.6
2087 Female, age 72, unknown 748.2
Ventral tegmental area
nTPM: 965.4
2223 Female, age 72, unknown 1062.0
2410 Female, age 72, unknown 983.8
1915 Female, age 42, unknown 965.7
2021 Male, age 53, unknown 955.5
2218 Male, age 76, both hemispheres 954.4
1942 Male, age 51, unknown 870.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1093.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1093.7
Samples: 139

Max nTPM: 2319.3
Min nTPM: 204.8
Std nTPM: 395.7
Median nTPM: 1048.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 2319.3
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 2274.2
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 2081.0
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 1893.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 1892.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1888.7
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 1823.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 1814.7
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 1733.6
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 1724.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 1722.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 2112.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 2112.1
FF:10158-103A5 76 years, female 2112.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 1570.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 1570.0
Samples: 4

Max nTPM: 1661.1
Min nTPM: 1431.5
Sample A Male 1660.9
Sample B Male 1526.5
Sample C Female 1431.5
Sample D Female 1661.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 34.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 34.0
68844164 Antisense, RP_050222_01_A07, Mouse strain C57BL/6J (56 days, male) 34.0

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