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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:1083.5 nTPM
HPA:1083.5 nTPM
GTEx:2481.9 nTPM
FANTOM5:2565.7 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 1083.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 960.5
1981 Female, age 72, midline 1168.3
2048 Male, age 55, midline 973.4
2816 Male, age 47, midline 935.9
2194 Female, age 79, both hemispheres 895.3
2565 Male, age 75, midline 829.8
Cervical spinal cord, dorsal horn
nTPM: 1083.5
2296 Male, age 66, both hemispheres 1489.5
2173 Female, age 72, unknown 1361.6
2069 Male, age 47, both hemispheres 1134.1
1877 Male, age 55, unknown 937.4
2721 Male, age 90, both hemispheres 811.6
2297 Male, age 75, both hemispheres 766.8
Cervical spinal cord, ventral horn
nTPM: 998.8
2098 Female, age 72, unknown 1307.1
2068 Male, age 55, unknown 1008.7
2480 Male, age 75, both hemispheres 1002.9
2809 Male, age 90, both hemispheres 931.0
2295 Male, age 66, both hemispheres 891.9
2820 Female, age 79, both hemispheres 851.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 2481.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 2481.9
Samples: 159

Max nTPM: 5203.4
Min nTPM: 654.0
Std nTPM: 981.9
Median nTPM: 2372.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 5203.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 5087.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 4941.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 4921.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 4886.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 4805.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 4686.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 4603.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 4414.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 4167.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 4074.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 3948.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 3879.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 3851.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 3842.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 3813.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 3793.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 3727.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 3709.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 3685.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 3671.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 3611.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 3526.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 3489.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 3487.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 3480.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 3433.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 3328.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 3324.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 3319.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 3295.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 3267.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 3261.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 3251.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 3240.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 3215.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 3175.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 3169.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 3123.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 3121.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 3022.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 2976.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 2969.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 2945.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 2932.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 2905.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 2903.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 2898.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 2877.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 2874.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 2851.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 2838.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 2835.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 2799.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 2791.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 2733.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 2721.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 2717.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 2682.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 2647.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 2619.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 2579.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 2565.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 2550.6
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 2531.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 2523.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 2516.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 2499.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 2496.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 2476.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 2459.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 2432.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 2428.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 2418.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 2418.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 2405.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 2395.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 2390.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 2381.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 2372.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 2369.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 2351.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 2345.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 2338.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 2335.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 2328.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 2300.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 2285.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 2280.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 2267.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 2255.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 2245.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 2242.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 2214.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 2212.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 2210.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 2199.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 2195.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 2142.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 2118.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 2108.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 2052.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 2044.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 2044.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 2036.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 2031.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 2000.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 1991.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 1949.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 1932.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 1923.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 1873.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 1868.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 1847.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 1825.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1808.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 1805.1
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 1792.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 1786.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 1765.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 1758.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1713.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 1702.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 1686.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1685.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 1664.9
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 1652.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 1621.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 1610.9
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 1573.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 1569.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 1544.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1493.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 1487.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 1459.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 1449.8
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 1445.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1432.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 1407.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 1388.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 1371.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 1354.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 1351.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 1350.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1344.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 1341.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 1305.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 1187.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 1129.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 1018.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 966.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 962.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 952.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 927.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 824.2
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 792.3
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 788.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 710.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 654.0
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 2565.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 2565.7
FF:10181-103D1 60 years, female 3095.2
FF:10159-103A6 76 years, female 2036.1

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