MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:127.1 nTPM
HPA:127.1 nTPM
GTEx:73.2 nTPM
FANTOM5:83.3 Scaled Tags Per Million
Pig:100.9 nTPM
Mouse:88.9 nTPM
Allen mouse:3.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 127.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 121.5
2411 Female, age 72, unknown 123.5
2666 Male, age 74, left hemisphere 123.2
1827 Male, age 72, unknown 123.1
2219 Male, age 76, both hemispheres 122.6
1870 Female, age 42, unknown 122.3
2019 Male, age 18, unknown 122.1
2586 Male, age 75, left hemisphere 120.2
2828 Female, age 72, unknown 119.4
1830 Male, age 51, unknown 119.3
1833 Male, age 53, unknown 119.2
Dorsal raphe nucleus
nTPM: 122.1
1828 Male, age 53, unknown 124.3
2298 Female, age 72, unknown 123.6
2047 Male, age 72, unknown 122.7
2016 Female, age 72, unknown 120.1
2750 Male, age 76, both hemispheres 119.8
Inferior colliculus
nTPM: 122.6
2097 Female, age 72, unknown 124.4
2849 Male, age 72, unknown 123.3
1890 Male, age 53, unknown 121.8
1848 Female, age 42, unknown 121.0
Median raphe nucleus
nTPM: 127.1
2220 Male, age 76, midline 127.1
Pedunculopontine tegmental nucleus
nTPM: 124.4
2334 Male, age 80, both hemispheres 125.2
2338 Male, age 61, both hemispheres 124.2
1921 Female, age 85, both hemispheres 123.9
Periaquaductal grey, anterior
nTPM: 120.9
1947 Male, age 18, unknown 122.7
1795 Male, age 51, unknown 121.6
2502 Female, age 75, unknown 118.6
Periaquaductal grey, dorsal
nTPM: 121.9
1840 Male, age 53, unknown 123.5
2850 Male, age 76, both hemispheres 123.2
2464 Female, age 72, unknown 121.2
1831 Male, age 72, unknown 119.7
Periaquaductal grey, lateral
nTPM: 120.4
2272 Male, age 74, both hemispheres 124.3
2053 Male, age 18, unknown 119.4
2140 Male, age 76, both hemispheres 117.5
Pretectal area
nTPM: 122.7
1816 Male, age 51, unknown 127.7
1817 Female, age 42, unknown 126.7
1944 Female, age 72, unknown 126.4
2007 Male, age 72, unknown 125.2
1815 Male, age 53, unknown 123.7
2667 Female, age 75, unknown 122.6
2224 Female, age 72, unknown 122.5
2825 Male, age 18, unknown 120.9
2273 Male, age 74, both hemispheres 120.8
2407 Male, age 75, both hemispheres 117.4
2316 Male, age 76, right hemisphere 116.1
Red nucleus
nTPM: 120.5
2725 Female, age 75, unknown 125.2
1821 Female, age 72, unknown 124.3
2588 Male, age 74, left hemisphere 121.6
2823 Male, age 76, right hemisphere 121.5
1954 Female, age 42, unknown 120.4
2503 Female, age 72, unknown 120.2
2785 Male, age 18, unknown 120.1
2227 Male, age 72, unknown 119.3
2769 Male, age 72, unknown 119.3
1865 Male, age 51, unknown 118.4
2584 Male, age 75, left hemisphere 118.2
1904 Male, age 53, unknown 117.4
Substantia nigra
nTPM: 126.2
1916 Female, age 42, unknown 135.1
2241 Male, age 72, unknown 130.4
1851 Male, age 51, unknown 129.3
1941 Male, age 53, unknown 128.3
1889 Female, age 72, unknown 127.3
2665 Male, age 74, both hemispheres 125.0
2699 Male, age 18, unknown 124.3
2583 Male, age 75, right hemisphere 121.5
2590 Female, age 75, unknown 120.8
2409 Female, age 72, unknown 119.7
Superior colliculus
nTPM: 120.9
1796 Male, age 53, unknown 123.3
2668 Female, age 75, unknown 123.1
2261 Male, age 18, unknown 122.1
2087 Female, age 72, unknown 122.0
2587 Male, age 74, left hemisphere 121.7
2664 Male, age 75, both hemispheres 120.4
1895 Male, age 76, right hemisphere 120.2
1839 Male, age 51, unknown 120.0
1913 Female, age 42, unknown 119.3
1995 Male, age 72, unknown 117.1
Ventral tegmental area
nTPM: 123.5
1915 Female, age 42, unknown 128.2
2410 Female, age 72, unknown 125.7
2218 Male, age 76, both hemispheres 124.2
2223 Female, age 72, unknown 121.5
1942 Male, age 51, unknown 120.6
2021 Male, age 53, unknown 120.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 73.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 73.2
Samples: 139

Max nTPM: 155.4
Min nTPM: 39.0
Std nTPM: 18.5
Median nTPM: 69.1
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 155.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 139.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 111.0
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 109.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 108.7
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 108.6
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 106.3
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 100.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 99.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 98.8
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 98.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 83.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 83.3
FF:10158-103A5 76 years, female 83.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 100.9
Pig sample Sample description nTPM
Midbrain
nTPM: 101.0
Samples: 4

Max nTPM: 186.9
Min nTPM: 66.2
Sample A Female 186.9
Sample B Female 80.5
Sample C Male 66.2
Sample D Male 70.2
Periaqueductal gray
nTPM: 66.0
Samples: 3

Max nTPM: 68.6
Min nTPM: 63.2
Sample B Female 68.6
Sample C Male 66.3
Sample D Male 63.2
Substantia nigra
nTPM: 84.9
Samples: 4

Max nTPM: 112.5
Min nTPM: 55.6
Sample A Female 112.5
Sample B Female 55.6
Sample C Male 79.5
Sample D Male 92.0
Superior colliculi
nTPM: 84.5
Samples: 4

Max nTPM: 114.7
Min nTPM: 49.5
Sample A Female 114.7
Sample B Female 49.5
Sample C Male 88.4
Sample D Male 85.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 88.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 88.9
Samples: 4

Max nTPM: 97.7
Min nTPM: 78.8
Sample A Male 78.8
Sample B Male 83.3
Sample C Female 97.7
Sample D Female 95.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.7
68795402 Antisense, RP_041116_02_H04, Mouse strain C57BL/6J (56 days, male) 3.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
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