COLON - Expression summary
Protein expression
Coloni
h
m
l
n
Endothelial cells: Low
Glandular cells: Medium
Peripheral nerve/ganglion: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:46.5 nTPM
HPA:46.5 nTPM
GTEx:40.7 nTPM
FANTOM5:63.2 Scaled Tags Per Million

COLON - Antibody stainingi
Antibody HPA023015Antibody HPA052395
Endothelial cells LowLow
Glandular cells MediumMedium
Peripheral nerve/ganglion MediumLow





COLON - HPA RNA-seqi
Average nTPM 46.5
overview
Male, age 54 		Colon sample 67
nTPM: 35.3
Cell types%
Glandular cells:
65

Smooth muscle cells:
10

Other cell types:
25
overview
Female, age 57 		Colon sample 68
nTPM: 40.3
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55
overview
Male, age 80 		Colon sample 69
nTPM: 57.9
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40
overview
Male, age 68 		Colon sample 70
nTPM: 48.3
Cell types%
Glandular cells:
35

Smooth muscle cells:
10

Other cell types:
55
overview
Female, age 68 		Colon sample 76
nTPM: 56
Cell types%
Glandular cells:
25

Smooth muscle cells:
5

Other cell types:
70
overview
Female, age 61 		Colon sample 299
nTPM: 44.3
Cell types%
Glandular cells:
5

Smooth muscle cells:
65

Other cell types:
30
overview
Male, age 80 		Colon sample 300
nTPM: 51.7
Cell types%
Glandular cells:
15

Smooth muscle cells:
20

Other cell types:
65
overview
Female, age 78 		Colon sample 368
nTPM: 52.8
Cell types%
Glandular cells:
45

Smooth muscle cells:
5

Other cell types:
50
overview
Male, age 84 		Colon sample 381
nTPM: 43.7
Cell types%
Glandular cells:
50

Smooth muscle cells:
15

Other cell types:
35
overview
Male, age 80 		Colon sample 384
nTPM: 56.3
Cell types%
Glandular cells:
20

Smooth muscle cells:
35

Other cell types:
45
overview
Female, age 78 		Colon sample 389
nTPM: 43.2
Cell types%
Glandular cells:
35

Smooth muscle cells:
10

Other cell types:
55
overview
Female, age 69 		Colon sample 391
nTPM: 39.5
Cell types%
Glandular cells:
10

Smooth muscle cells:
45

Other cell types:
45
overview
Female, age 72 		Colon sample 403
nTPM: 35.1
Cell types%
Glandular cells:
20

Smooth muscle cells:
15

Other cell types:
65

COLON - GTEx RNA-seqi
Average nTPM 40.7
GTEx sample id Sample description nTPM
Colon - Sigmoid
Average nTPM: 34.9
Samples: 373

Max nTPM: 96.5
Min nTPM: 22.1
Std nTPM: 7.1
Median nTPM: 33.7
GTEX-11EQ8-2626-SM-5N9BO 60-69 years, male 96.5
GTEX-ZVZQ-2626-SM-59HLB 60-69 years, female 68.7
GTEX-1N2EF-1726-SM-EXUSI 60-69 years, male 64.1
GTEX-1LSNM-1426-SM-E6CIH 50-59 years, male 57.2
GTEX-WOFM-1926-SM-4OOSP 20-29 years, male 56.8
GTEX-1S5ZA-1426-SM-E6CJQ 20-29 years, male 53.3
GTEX-17HG3-1126-SM-7DUFC 30-39 years, female 53.1
GTEX-13O1R-2426-SM-5KLZZ 60-69 years, male 53.0
GTEX-ZQUD-1026-SM-4YCEZ 30-39 years, male 50.1
GTEX-13W3W-2226-SM-5LU4M 60-69 years, female 49.6
GTEX-11TUW-2326-SM-5EQMO 60-69 years, male 49.5
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Colon - Transverse
Average nTPM: 40.7
Samples: 406

Max nTPM: 90.3
Min nTPM: 23.2
Std nTPM: 9.3
Median nTPM: 39.5
GTEX-1399R-2226-SM-5P9JB 30-39 years, male 90.3
GTEX-14E6E-1526-SM-5RQIG 30-39 years, male 75.1
GTEX-132AR-2726-SM-5PNVN 50-59 years, female 72.0
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 71.1
GTEX-OOBJ-1426-SM-E6CHH 60-69 years, male 67.1
GTEX-ZT9W-1826-SM-51MQX 50-59 years, male 65.7
GTEX-YEC3-2426-SM-DO11A 50-59 years, male 65.6
GTEX-14XAO-2026-SM-69LOI 60-69 years, female 65.3
GTEX-13PL7-2526-SM-5IFGR 60-69 years, female 63.1
GTEX-1IKOE-2026-SM-AHZ31 30-39 years, female 63.0
GTEX-1K9T9-2826-SM-D4P3F 50-59 years, female 59.9
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COLON - FANTOM5 CAGEi
Max Scaled Tags Per Million 63.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Colon
Scaled Tags Per Million: 63.2
FF:10014-101C5 62,83,84 years, mixed 63.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.