MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:131.3 nTPM
HPA:131.3 nTPM
GTEx:86.2 nTPM
FANTOM5:209.0 Scaled Tags Per Million
Pig:109.7 nTPM
Mouse:204.7 nTPM
Allen mouse:21.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 131.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 117.1
2219 Male, age 76, both hemispheres 124.4
2019 Male, age 18, unknown 121.7
2411 Female, age 72, unknown 119.2
2666 Male, age 74, left hemisphere 117.8
1833 Male, age 53, unknown 117.4
1870 Female, age 42, unknown 117.3
1827 Male, age 72, unknown 115.1
1830 Male, age 51, unknown 115.0
2586 Male, age 75, left hemisphere 111.4
2828 Female, age 72, unknown 111.3
Dorsal raphe nucleus
nTPM: 121.2
2298 Female, age 72, unknown 128.5
2047 Male, age 72, unknown 126.2
1828 Male, age 53, unknown 120.7
2750 Male, age 76, both hemispheres 116.5
2016 Female, age 72, unknown 114.3
Inferior colliculus
nTPM: 118.7
2097 Female, age 72, unknown 121.9
2849 Male, age 72, unknown 119.4
1890 Male, age 53, unknown 118.7
1848 Female, age 42, unknown 114.9
Median raphe nucleus
nTPM: 131.3
2220 Male, age 76, midline 131.3
Pedunculopontine tegmental nucleus
nTPM: 121.9
2334 Male, age 80, both hemispheres 127.7
2338 Male, age 61, both hemispheres 119.5
1921 Female, age 85, both hemispheres 118.4
Periaquaductal grey, anterior
nTPM: 115.8
1795 Male, age 51, unknown 116.1
1947 Male, age 18, unknown 115.9
2502 Female, age 75, unknown 115.5
Periaquaductal grey, dorsal
nTPM: 116.1
2850 Male, age 76, both hemispheres 119.6
1840 Male, age 53, unknown 119.2
1831 Male, age 72, unknown 113.8
2464 Female, age 72, unknown 112.0
Periaquaductal grey, lateral
nTPM: 114.4
2272 Male, age 74, both hemispheres 116.3
2140 Male, age 76, both hemispheres 114.7
2053 Male, age 18, unknown 112.2
Pretectal area
nTPM: 122.0
1817 Female, age 42, unknown 128.7
1944 Female, age 72, unknown 128.4
1816 Male, age 51, unknown 126.2
2667 Female, age 75, unknown 125.2
2007 Male, age 72, unknown 124.6
2407 Male, age 75, both hemispheres 122.9
1815 Male, age 53, unknown 122.5
2224 Female, age 72, unknown 120.3
2825 Male, age 18, unknown 116.2
2273 Male, age 74, both hemispheres 116.1
2316 Male, age 76, right hemisphere 111.3
Red nucleus
nTPM: 114.7
1821 Female, age 72, unknown 119.2
2785 Male, age 18, unknown 118.8
2725 Female, age 75, unknown 118.7
2584 Male, age 75, left hemisphere 117.9
1954 Female, age 42, unknown 116.3
1865 Male, age 51, unknown 114.4
1904 Male, age 53, unknown 113.7
2769 Male, age 72, unknown 113.3
2503 Female, age 72, unknown 113.2
2227 Male, age 72, unknown 112.5
2588 Male, age 74, left hemisphere 109.2
2823 Male, age 76, right hemisphere 108.8
Substantia nigra
nTPM: 126.1
1916 Female, age 42, unknown 139.9
2241 Male, age 72, unknown 134.8
2409 Female, age 72, unknown 132.0
1851 Male, age 51, unknown 129.0
1941 Male, age 53, unknown 126.0
1889 Female, age 72, unknown 125.7
2699 Male, age 18, unknown 124.2
2665 Male, age 74, both hemispheres 120.4
2583 Male, age 75, right hemisphere 116.8
2590 Female, age 75, unknown 112.3
Superior colliculus
nTPM: 115.6
2087 Female, age 72, unknown 122.0
2668 Female, age 75, unknown 121.4
1796 Male, age 53, unknown 117.2
2587 Male, age 74, left hemisphere 116.5
1895 Male, age 76, right hemisphere 116.3
1839 Male, age 51, unknown 115.2
2261 Male, age 18, unknown 115.2
1913 Female, age 42, unknown 113.8
2664 Male, age 75, both hemispheres 109.7
1995 Male, age 72, unknown 108.9
Ventral tegmental area
nTPM: 120.9
2410 Female, age 72, unknown 127.8
1915 Female, age 42, unknown 125.4
2218 Male, age 76, both hemispheres 122.1
2223 Female, age 72, unknown 119.4
1942 Male, age 51, unknown 115.9
2021 Male, age 53, unknown 115.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 86.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 86.2
Samples: 139

Max nTPM: 488.0
Min nTPM: 36.5
Std nTPM: 63.7
Median nTPM: 69.8
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 488.0
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 469.4
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 361.5
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 274.9
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 247.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 183.4
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 163.0
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 162.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 160.4
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 151.1
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 137.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 209.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 209.0
FF:10158-103A5 76 years, female 209.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 109.7
Pig sample Sample description nTPM
Midbrain
nTPM: 96.6
Samples: 4

Max nTPM: 112.3
Min nTPM: 81.4
Sample A Female 112.3
Sample B Female 81.4
Sample C Male 99.8
Sample D Male 92.9
Periaqueductal gray
nTPM: 80.3
Samples: 3

Max nTPM: 89.8
Min nTPM: 73.9
Sample B Female 77.2
Sample C Male 89.8
Sample D Male 73.9
Substantia nigra
nTPM: 97.4
Samples: 4

Max nTPM: 127.8
Min nTPM: 73.8
Sample A Female 127.8
Sample B Female 73.8
Sample C Male 112.0
Sample D Male 76.1
Superior colliculi
nTPM: 109.7
Samples: 4

Max nTPM: 127.2
Min nTPM: 95.7
Sample A Female 127.2
Sample B Female 95.7
Sample C Male 119.6
Sample D Male 96.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 204.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 204.7
Samples: 4

Max nTPM: 213.7
Min nTPM: 194.4
Sample A Male 194.4
Sample B Male 200.1
Sample C Female 213.7
Sample D Female 210.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 21.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 21.0
413807 Antisense, RP_040809_01_F06, Mouse strain C57BL/6J (56 days, male) 21.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.