MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:91.5 nTPM
HPA:91.5 nTPM
GTEx:137.6 nTPM
FANTOM5:64.6 Scaled Tags Per Million
Mouse:79.6 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 91.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 87.6
2411 Female, age 72, unknown 93.4
1870 Female, age 42, unknown 91.4
1827 Male, age 72, unknown 88.8
2828 Female, age 72, unknown 88.3
1833 Male, age 53, unknown 88.2
1830 Male, age 51, unknown 87.7
2019 Male, age 18, unknown 87.0
2666 Male, age 74, left hemisphere 85.2
2219 Male, age 76, both hemispheres 84.1
2586 Male, age 75, left hemisphere 81.9
Dorsal raphe nucleus
nTPM: 89.3
2047 Male, age 72, unknown 91.6
2298 Female, age 72, unknown 91.3
2750 Male, age 76, both hemispheres 90.2
1828 Male, age 53, unknown 87.4
2016 Female, age 72, unknown 85.9
Inferior colliculus
nTPM: 85.9
1848 Female, age 42, unknown 86.8
2097 Female, age 72, unknown 85.9
1890 Male, age 53, unknown 85.7
2849 Male, age 72, unknown 85.1
Median raphe nucleus
nTPM: 89.0
2220 Male, age 76, midline 89.0
Pedunculopontine tegmental nucleus
nTPM: 91.5
2338 Male, age 61, both hemispheres 93.5
2334 Male, age 80, both hemispheres 91.5
1921 Female, age 85, both hemispheres 89.7
Periaquaductal grey, anterior
nTPM: 86.4
1947 Male, age 18, unknown 89.2
2502 Female, age 75, unknown 85.8
1795 Male, age 51, unknown 84.3
Periaquaductal grey, dorsal
nTPM: 85.6
2464 Female, age 72, unknown 86.5
2850 Male, age 76, both hemispheres 86.4
1831 Male, age 72, unknown 84.8
1840 Male, age 53, unknown 84.8
Periaquaductal grey, lateral
nTPM: 85.9
2053 Male, age 18, unknown 86.3
2272 Male, age 74, both hemispheres 86.3
2140 Male, age 76, both hemispheres 85.0
Pretectal area
nTPM: 87.3
2667 Female, age 75, unknown 89.9
1817 Female, age 42, unknown 89.1
2224 Female, age 72, unknown 88.6
1815 Male, age 53, unknown 88.4
2273 Male, age 74, both hemispheres 87.6
1944 Female, age 72, unknown 87.0
2007 Male, age 72, unknown 86.9
2316 Male, age 76, right hemisphere 86.8
1816 Male, age 51, unknown 86.2
2825 Male, age 18, unknown 86.2
2407 Male, age 75, both hemispheres 84.2
Red nucleus
nTPM: 89.5
1821 Female, age 72, unknown 95.6
1904 Male, age 53, unknown 92.9
1865 Male, age 51, unknown 92.0
1954 Female, age 42, unknown 90.9
2503 Female, age 72, unknown 90.4
2588 Male, age 74, left hemisphere 89.2
2725 Female, age 75, unknown 89.2
2769 Male, age 72, unknown 88.7
2823 Male, age 76, right hemisphere 88.7
2227 Male, age 72, unknown 87.3
2785 Male, age 18, unknown 87.2
2584 Male, age 75, left hemisphere 82.0
Substantia nigra
nTPM: 89.2
1916 Female, age 42, unknown 94.6
1851 Male, age 51, unknown 94.5
2699 Male, age 18, unknown 90.9
1889 Female, age 72, unknown 90.3
2409 Female, age 72, unknown 90.2
2241 Male, age 72, unknown 88.8
2590 Female, age 75, unknown 87.1
1941 Male, age 53, unknown 86.6
2583 Male, age 75, right hemisphere 84.7
2665 Male, age 74, both hemispheres 84.1
Superior colliculus
nTPM: 86.5
1913 Female, age 42, unknown 90.0
1895 Male, age 76, right hemisphere 88.7
2587 Male, age 74, left hemisphere 88.7
1995 Male, age 72, unknown 87.5
1796 Male, age 53, unknown 87.4
2668 Female, age 75, unknown 86.3
1839 Male, age 51, unknown 85.9
2261 Male, age 18, unknown 84.9
2087 Female, age 72, unknown 83.2
2664 Male, age 75, both hemispheres 82.4
Ventral tegmental area
nTPM: 91.1
2410 Female, age 72, unknown 96.7
2223 Female, age 72, unknown 92.2
1915 Female, age 42, unknown 91.3
2021 Male, age 53, unknown 89.8
2218 Male, age 76, both hemispheres 89.5
1942 Male, age 51, unknown 87.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 137.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 137.6
Samples: 139

Max nTPM: 288.6
Min nTPM: 85.8
Std nTPM: 33.3
Median nTPM: 132.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 288.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 275.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 272.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 226.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 216.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 191.8
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 191.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 189.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 189.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 187.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 187.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 64.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 64.6
FF:10158-103A5 76 years, female 64.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 79.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 79.6
Samples: 4

Max nTPM: 84.1
Min nTPM: 75.9
Sample A Male 84.1
Sample B Male 76.2
Sample C Female 75.9
Sample D Female 82.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
70474941 Antisense, RP_050623_01_D11, Mouse strain C57BL/6J (56 days, male) 0.4

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