MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:13.5 nTPM
HPA:13.5 nTPM
GTEx:9.9 nTPM
FANTOM5:24.5 Scaled Tags Per Million
Pig:20.8 nTPM
Mouse:27.2 nTPM
Allen mouse:3.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 13.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 13.4
2586 Male, age 75, left hemisphere 20.0
2019 Male, age 18, unknown 13.7
2828 Female, age 72, unknown 13.7
1827 Male, age 72, unknown 13.4
2666 Male, age 74, left hemisphere 13.4
2411 Female, age 72, unknown 13.3
2219 Male, age 76, both hemispheres 12.0
1833 Male, age 53, unknown 11.8
1830 Male, age 51, unknown 11.4
1870 Female, age 42, unknown 11.4
Dorsal raphe nucleus
nTPM: 11.4
2047 Male, age 72, unknown 12.3
1828 Male, age 53, unknown 12.2
2750 Male, age 76, both hemispheres 11.3
2298 Female, age 72, unknown 11.1
2016 Female, age 72, unknown 10.0
Inferior colliculus
nTPM: 12.0
1890 Male, age 53, unknown 12.7
2097 Female, age 72, unknown 12.3
1848 Female, age 42, unknown 12.2
2849 Male, age 72, unknown 10.9
Median raphe nucleus
nTPM: 10.1
2220 Male, age 76, midline 10.1
Pedunculopontine tegmental nucleus
nTPM: 10.3
1921 Female, age 85, both hemispheres 11.3
2334 Male, age 80, both hemispheres 10.6
2338 Male, age 61, both hemispheres 8.9
Periaquaductal grey, anterior
nTPM: 12.9
2502 Female, age 75, unknown 13.3
1795 Male, age 51, unknown 13.0
1947 Male, age 18, unknown 12.4
Periaquaductal grey, dorsal
nTPM: 10.9
2464 Female, age 72, unknown 12.1
1840 Male, age 53, unknown 11.9
1831 Male, age 72, unknown 11.5
2850 Male, age 76, both hemispheres 8.3
Periaquaductal grey, lateral
nTPM: 9.7
2053 Male, age 18, unknown 10.7
2140 Male, age 76, both hemispheres 9.9
2272 Male, age 74, both hemispheres 8.6
Pretectal area
nTPM: 12.5
1816 Male, age 51, unknown 15.4
2007 Male, age 72, unknown 15.0
1817 Female, age 42, unknown 14.5
1944 Female, age 72, unknown 13.9
1815 Male, age 53, unknown 12.9
2407 Male, age 75, both hemispheres 12.1
2667 Female, age 75, unknown 12.1
2825 Male, age 18, unknown 11.6
2316 Male, age 76, right hemisphere 10.9
2224 Female, age 72, unknown 10.4
2273 Male, age 74, both hemispheres 8.4
Red nucleus
nTPM: 13.5
2588 Male, age 74, left hemisphere 15.9
2584 Male, age 75, left hemisphere 15.4
2503 Female, age 72, unknown 13.8
1954 Female, age 42, unknown 13.7
2227 Male, age 72, unknown 13.7
2785 Male, age 18, unknown 13.6
2769 Male, age 72, unknown 13.3
1821 Female, age 72, unknown 13.2
2725 Female, age 75, unknown 13.1
1904 Male, age 53, unknown 13.0
1865 Male, age 51, unknown 11.9
2823 Male, age 76, right hemisphere 11.8
Substantia nigra
nTPM: 12.6
1916 Female, age 42, unknown 14.8
2583 Male, age 75, right hemisphere 13.7
2665 Male, age 74, both hemispheres 13.6
2590 Female, age 75, unknown 12.9
1851 Male, age 51, unknown 12.7
1889 Female, age 72, unknown 12.7
2409 Female, age 72, unknown 11.8
1941 Male, age 53, unknown 11.5
2241 Male, age 72, unknown 11.1
2699 Male, age 18, unknown 11.0
Superior colliculus
nTPM: 12.5
2664 Male, age 75, both hemispheres 15.9
2087 Female, age 72, unknown 14.2
2261 Male, age 18, unknown 13.5
1796 Male, age 53, unknown 12.9
1839 Male, age 51, unknown 12.6
2668 Female, age 75, unknown 12.3
2587 Male, age 74, left hemisphere 11.3
1895 Male, age 76, right hemisphere 11.0
1995 Male, age 72, unknown 10.8
1913 Female, age 42, unknown 10.3
Ventral tegmental area
nTPM: 12.2
2410 Female, age 72, unknown 13.3
1915 Female, age 42, unknown 12.5
1942 Male, age 51, unknown 12.2
2218 Male, age 76, both hemispheres 12.0
2021 Male, age 53, unknown 11.5
2223 Female, age 72, unknown 11.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 9.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.9
Samples: 139

Max nTPM: 14.3
Min nTPM: 5.8
Std nTPM: 1.8
Median nTPM: 9.5
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 14.3
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 14.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 13.7
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 13.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 13.2
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 13.2
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 13.2
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 13.1
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 13.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 12.8
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 12.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 24.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 24.5
FF:10158-103A5 76 years, female 24.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 20.8
Pig sample Sample description nTPM
Midbrain
nTPM: 20.4
Samples: 4

Max nTPM: 28.0
Min nTPM: 14.9
Sample A Female 19.8
Sample B Female 14.9
Sample C Male 28.0
Sample D Male 18.7
Periaqueductal gray
nTPM: 14.1
Samples: 3

Max nTPM: 15.4
Min nTPM: 11.5
Sample B Female 15.3
Sample C Male 15.4
Sample D Male 11.5
Substantia nigra
nTPM: 17.7
Samples: 4

Max nTPM: 23.0
Min nTPM: 15.0
Sample A Female 23.0
Sample B Female 15.0
Sample C Male 17.2
Sample D Male 15.7
Superior colliculi
nTPM: 20.9
Samples: 4

Max nTPM: 22.5
Min nTPM: 19.5
Sample A Female 21.1
Sample B Female 19.5
Sample C Male 22.5
Sample D Male 20.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 27.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 27.2
Samples: 4

Max nTPM: 27.3
Min nTPM: 27.0
Sample A Male 27.0
Sample B Male 27.3
Sample C Female 27.2
Sample D Female 27.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.1
68798067 Antisense, RP_050215_01_F12, Mouse strain C57BL/6J (56 days, male) 4.7
70918832 Antisense, RP_050712_04_F01, Mouse strain C57BL/6J (56 days, male) 1.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.