MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:32.6 nTPM
HPA:32.6 nTPM
GTEx:34.1 nTPM
FANTOM5:53.7 Scaled Tags Per Million
Pig:44.5 nTPM
Mouse:148.6 nTPM
Allen mouse:7.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 32.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.2
1827 Male, age 72, unknown 29.7
2411 Female, age 72, unknown 29.7
2586 Male, age 75, left hemisphere 28.2
2666 Male, age 74, left hemisphere 27.7
2019 Male, age 18, unknown 27.4
1870 Female, age 42, unknown 26.7
1833 Male, age 53, unknown 23.8
2828 Female, age 72, unknown 23.6
1830 Male, age 51, unknown 23.0
2219 Male, age 76, both hemispheres 22.0
Dorsal raphe nucleus
nTPM: 29.1
2298 Female, age 72, unknown 37.7
2047 Male, age 72, unknown 31.1
2750 Male, age 76, both hemispheres 28.8
1828 Male, age 53, unknown 24.8
2016 Female, age 72, unknown 23.2
Inferior colliculus
nTPM: 29.5
2097 Female, age 72, unknown 37.3
1890 Male, age 53, unknown 28.3
2849 Male, age 72, unknown 26.9
1848 Female, age 42, unknown 25.7
Median raphe nucleus
nTPM: 32.6
2220 Male, age 76, midline 32.6
Pedunculopontine tegmental nucleus
nTPM: 26.5
2334 Male, age 80, both hemispheres 31.7
1921 Female, age 85, both hemispheres 26.4
2338 Male, age 61, both hemispheres 21.4
Periaquaductal grey, anterior
nTPM: 24.5
1795 Male, age 51, unknown 26.6
2502 Female, age 75, unknown 25.0
1947 Male, age 18, unknown 21.9
Periaquaductal grey, dorsal
nTPM: 27.7
1840 Male, age 53, unknown 33.0
2464 Female, age 72, unknown 26.7
2850 Male, age 76, both hemispheres 26.0
1831 Male, age 72, unknown 25.0
Periaquaductal grey, lateral
nTPM: 24.0
2053 Male, age 18, unknown 24.6
2140 Male, age 76, both hemispheres 24.5
2272 Male, age 74, both hemispheres 22.9
Pretectal area
nTPM: 30.6
1816 Male, age 51, unknown 41.1
2007 Male, age 72, unknown 38.8
1944 Female, age 72, unknown 34.7
1817 Female, age 42, unknown 33.9
1815 Male, age 53, unknown 32.0
2224 Female, age 72, unknown 31.2
2825 Male, age 18, unknown 28.0
2407 Male, age 75, both hemispheres 26.6
2667 Female, age 75, unknown 26.5
2273 Male, age 74, both hemispheres 23.5
2316 Male, age 76, right hemisphere 19.8
Red nucleus
nTPM: 22.2
2785 Male, age 18, unknown 28.1
2584 Male, age 75, left hemisphere 27.4
2588 Male, age 74, left hemisphere 25.0
2725 Female, age 75, unknown 24.6
1821 Female, age 72, unknown 22.8
2503 Female, age 72, unknown 21.9
2769 Male, age 72, unknown 20.3
1904 Male, age 53, unknown 19.9
1954 Female, age 42, unknown 19.9
2227 Male, age 72, unknown 19.4
2823 Male, age 76, right hemisphere 19.1
1865 Male, age 51, unknown 18.6
Substantia nigra
nTPM: 26.7
1889 Female, age 72, unknown 31.8
2583 Male, age 75, right hemisphere 29.0
2665 Male, age 74, both hemispheres 29.0
2590 Female, age 75, unknown 27.4
1916 Female, age 42, unknown 27.2
2241 Male, age 72, unknown 27.2
1941 Male, age 53, unknown 26.6
1851 Male, age 51, unknown 26.1
2409 Female, age 72, unknown 22.9
2699 Male, age 18, unknown 19.7
Superior colliculus
nTPM: 26.7
2087 Female, age 72, unknown 31.6
2261 Male, age 18, unknown 30.8
1796 Male, age 53, unknown 30.3
2587 Male, age 74, left hemisphere 27.2
1839 Male, age 51, unknown 25.6
2664 Male, age 75, both hemispheres 25.0
2668 Female, age 75, unknown 25.0
1913 Female, age 42, unknown 24.3
1995 Male, age 72, unknown 23.9
1895 Male, age 76, right hemisphere 23.0
Ventral tegmental area
nTPM: 27.0
2223 Female, age 72, unknown 31.1
2410 Female, age 72, unknown 26.8
2021 Male, age 53, unknown 26.4
2218 Male, age 76, both hemispheres 26.1
1915 Female, age 42, unknown 26.0
1942 Male, age 51, unknown 25.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 34.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 34.1
Samples: 139

Max nTPM: 63.8
Min nTPM: 19.6
Std nTPM: 9.6
Median nTPM: 31.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 63.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 62.9
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 61.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 59.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 58.8
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 58.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 55.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 52.8
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 50.5
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 50.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 50.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 53.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 53.7
FF:10158-103A5 76 years, female 53.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 44.5
Pig sample Sample description nTPM
Midbrain
nTPM: 44.5
Samples: 4

Max nTPM: 97.8
Min nTPM: 22.4
Sample A Female 22.4
Sample B Female 22.6
Sample C Male 97.8
Sample D Male 35.1
Periaqueductal gray
nTPM: 21.9
Samples: 3

Max nTPM: 28.4
Min nTPM: 18.1
Sample B Female 19.3
Sample C Male 28.4
Sample D Male 18.1
Substantia nigra
nTPM: 25.0
Samples: 4

Max nTPM: 33.9
Min nTPM: 12.1
Sample A Female 33.9
Sample B Female 21.3
Sample C Male 32.8
Sample D Male 12.1
Superior colliculi
nTPM: 44.3
Samples: 4

Max nTPM: 79.5
Min nTPM: 30.2
Sample A Female 34.4
Sample B Female 33.1
Sample C Male 79.5
Sample D Male 30.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 148.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 148.6
Samples: 4

Max nTPM: 150.8
Min nTPM: 146.3
Sample A Male 146.3
Sample B Male 148.8
Sample C Female 148.3
Sample D Female 150.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.5
71381076 Antisense, RP_050503_04_H03, Mouse strain C57BL/6J (56 days, male) 7.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.