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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:13.6 nTPM
HPA:13.6 nTPM
FANTOM5:84.8 Scaled Tags Per Million
Pig:26.1 nTPM
Mouse:25.1 nTPM
Allen mouse:0.6 Expression energy

THALAMUS - HPA Brain RNA-seq
Max nTPM 13.6
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 10.1
2497 Male, age 66, unknown 12.1
2032 Female, age 42, unknown 11.1
2396 Male, age 61, right hemisphere 7.2
Centromedial thalamic nucleus
nTPM: 10.1
2279 Female, age 85, left hemisphere 11.6
2401 Male, age 76, right hemisphere 8.6
Habenula
nTPM: 8.4
1957 Male, age 80, both hemispheres 9.1
2252 Male, age 62, unknown 8.7
2276 Male, age 66, unknown 8.1
2203 Male, age 61, left hemisphere 7.6
Lateral geniculate body
nTPM: 11.3
2659 Male, age 66, unknown 13.8
2575 Female, age 94, right hemisphere 12.0
2857 Male, age 74, right hemisphere 11.7
2106 Female, age 67, right hemisphere 11.4
2841 Male, age 80, both hemispheres 11.4
1953 Male, age 62, unknown 10.7
2035 Female, age 72, unknown 10.3
2399 Male, age 61, left hemisphere 9.1
Lateral thalamic nuclei
nTPM: 10.5
2577 Male, age 74, both hemispheres 11.8
2661 Female, age 72, unknown 11.6
2573 Female, age 94, left hemisphere 10.3
2765 Female, age 67, both hemispheres 9.5
1903 Male, age 76, left hemisphere 9.3
Medial dorsal thalamic nucleus
nTPM: 10.3
2283 Male, age 80, right hemisphere 13.8
2660 Female, age 72, unknown 13.3
2492 Male, age 75, right hemisphere 11.7
2576 Male, age 74, both hemispheres 11.7
2402 Female, age 67, both hemispheres 11.5
2026 Male, age 62, unknown 11.0
2039 Female, age 72, unknown 10.6
1810 Male, age 48, unknown 10.4
1859 Male, age 76, both hemispheres 9.5
1930 Female, age 42, unknown 9.5
2498 Male, age 66, unknown 9.4
2572 Female, age 94, right hemisphere 6.2
1971 Male, age 61, right hemisphere 5.2
Medial geniculate body
nTPM: 13.0
2571 Male, age 75, right hemisphere 22.8
2217 Female, age 72, unknown 13.0
2650 Female, age 94, left hemisphere 12.2
2207 Male, age 80, right hemisphere 11.1
1811 Female, age 42, unknown 10.7
2049 Male, age 76, both hemispheres 10.7
2657 Male, age 74, right hemisphere 10.7
Nucleus reuniens
nTPM: 11.7
2210 Female, age 85, left hemisphere 14.8
2205 Male, age 80, left hemisphere 12.3
2212 Female, age 67, left hemisphere 7.9
Nucleus rhomboideus
nTPM: 10.8
2280 Female, age 85, left hemisphere 14.2
2206 Male, age 80, both hemispheres 10.1
2213 Female, age 67, left hemisphere 8.1
Posterior thalamic nucleus
nTPM: 10.8
2655 Male, age 74, right hemisphere 14.7
2495 Female, age 67, right hemisphere 11.8
2266 Male, age 76, right hemisphere 11.6
2649 Female, age 94, both hemispheres 5.0
Pulvinar
nTPM: 10.7
2724 Male, age 74, right hemisphere 13.0
2582 Female, age 72, unknown 12.7
1929 Male, age 48, unknown 12.1
2398 Male, age 61, left hemisphere 12.1
2496 Female, age 67, right hemisphere 11.1
2214 Male, age 76, right hemisphere 10.8
1972 Male, age 62, unknown 9.4
1899 Female, age 42, unknown 8.8
2499 Male, age 66, unknown 8.8
1932 Male, age 80, right hemisphere 8.3
Subthalamic nucleus
nTPM: 13.6
2056 Female, age 72, unknown 14.7
2658 Male, age 74, both hemispheres 14.0
2779 Female, age 42, unknown 14.0
2124 Male, age 62, unknown 13.8
2282 Male, age 61, both hemispheres 13.7
2216 Male, age 48, unknown 13.1
2275 Male, age 66, unknown 12.8
2406 Female, age 72, unknown 12.6
Ventral posterolateral thalamic nucleus
nTPM: 11.4
2581 Female, age 72, unknown 16.0
2570 Male, age 75, right hemisphere 14.3
2578 Male, age 74, both hemispheres 11.4
2740 Male, age 76, right hemisphere 10.3
2197 Male, age 80, both hemispheres 9.4
2397 Male, age 61, right hemisphere 7.0
Ventral posteromedial thalamic nucleus
nTPM: 11.9
2127 Male, age 76, right hemisphere 13.4
2281 Male, age 75, right hemisphere 13.4
2653 Male, age 74, both hemispheres 11.9
2758 Male, age 80, both hemispheres 11.5
2202 Male, age 61, left hemisphere 9.4
Ventral thalamic nuclei
nTPM: 11.7
2858 Female, age 72, unknown 14.8
2652 Male, age 74, left hemisphere 14.5
2580 Male, age 66, unknown 13.2
1912 Female, age 42, unknown 10.6
2204 Male, age 80, both hemispheres 10.6
1845 Male, age 48, unknown 10.4
2285 Male, age 62, unknown 10.3
2291 Female, age 72, unknown 10.3
1860 Male, age 76, both hemispheres 10.2
Ventromedial nucleus
nTPM: 11.9
1822 Female, age 42, unknown 12.2
1982 Female, age 72, unknown 11.6
Zona incerta
nTPM: 12.6
2403 Male, age 62, unknown 14.9
2215 Male, age 66, unknown 12.4
2822 Male, age 74, right hemisphere 12.3
2663 Female, age 72, unknown 12.0
2208 Male, age 80, right hemisphere 11.4

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 84.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 84.8
FF:10154-103A1 76 years, female 84.8

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 26.1
Pig sample Sample description nTPM
Thalamus
nTPM: 26.1
Samples: 4

Max nTPM: 29.7
Min nTPM: 23.7
Sample A Female 26.7
Sample B Female 29.7
Sample C Male 23.7
Sample D Male 24.3

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 25.1
Mouse sample Sample description nTPM
Thalamus
nTPM: 25.1
Samples: 4

Max nTPM: 28.4
Min nTPM: 22.2
Sample A Male 22.2
Sample B Male 28.4
Sample C Female 22.3
Sample D Female 27.4

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 0.6
79904518 Antisense, RP_071218_03_D12, Mouse strain C57BL/6J (56 days, male) 0.6
79908808 Antisense, RP_071218_03_D12, Mouse strain C57BL/6J (56 days, male) 0.3

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