BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:5.1 nTPM
HPA:5.1 nTPM
GTEx:8.3 nTPM
FANTOM5:32.5 Scaled Tags Per Million
Pig:72.9 nTPM
Mouse:122.3 nTPM
Allen mouse:1.7 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA013796Antibody HPA014518
Glial cells MediumMedium
Neuronal cells Not detectedNot detected





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 5.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 4.9
2288 Male, age 75, left hemisphere 8.6
1857 Female, age 85, left hemisphere 5.6
2846 Female, age 79, unknown 5.1
2290 Female, age 72, unknown 4.7
2481 Female, age 94, left hemisphere 4.3
2289 Male, age 61, right hemisphere 4.2
1854 Male, age 80, left hemisphere 3.6
1781 Male, age 74, unknown 2.8
Claustrum
nTPM: 2.4
2196 Female, age 79, unknown 4.4
1956 Male, age 74, unknown 3.1
2198 Male, age 80, both hemispheres 2.9
2292 Female, age 85, both hemispheres 2.9
2568 Male, age 61, both hemispheres 2.4
2392 Female, age 94, both hemispheres 2.2
2645 Female, age 72, unknown 1.4
2284 Female, age 91, both hemispheres 1.2
2491 Male, age 75, both hemispheres 1.2
Globus pallidus, externus
nTPM: 5.1
2395 Male, age 75, both hemispheres 8.0
2772 Female, age 79, unknown 7.5
1996 Male, age 80, right hemisphere 6.7
2567 Female, age 72, unknown 1.7
2646 Male, age 61, right hemisphere 1.7
Globus pallidus, internus
nTPM: 4.4
2778 Female, age 91, both hemispheres 7.0
1818 Male, age 74, unknown 6.2
2037 Male, age 80, right hemisphere 6.1
2111 Female, age 85, right hemisphere 3.7
2566 Female, age 72, unknown 3.5
2287 Male, age 75, right hemisphere 2.4
2483 Female, age 94, right hemisphere 2.0
Nucleus accumbens
nTPM: 4.7
2286 Male, age 75, left hemisphere 6.6
2698 Female, age 72, unknown 6.5
2391 Female, age 94, left hemisphere 5.2
1806 Female, age 85, left hemisphere 4.6
1783 Male, age 74, unknown 4.4
1856 Female, age 91, right hemisphere 4.1
2732 Male, age 80, right hemisphere 3.7
2824 Male, age 61, right hemisphere 2.3
Nucleus basalis of Meynert
nTPM: 3.4
2393 Male, age 80, right hemisphere 4.5
2821 Male, age 75, both hemispheres 4.2
2484 Female, age 94, left hemisphere 3.1
2569 Male, age 61, both hemispheres 1.6
Nucleus of the diagonal band
nTPM: 4.5
1812 Female, age 91, both hemispheres 6.1
2195 Female, age 85, both hemispheres 4.8
2775 Male, age 80, right hemisphere 4.7
1979 Male, age 74, unknown 3.9
2029 Male, age 61, right hemisphere 3.1
Olfactory tubercle
nTPM: 3.7
1846 Male, age 80, right hemisphere 4.8
2487 Female, age 94, left hemisphere 4.5
2856 Male, age 75, right hemisphere 3.6
1998 Female, age 91, both hemispheres 1.9
Putamen
nTPM: 3.2
2482 Female, age 94, left hemisphere 5.0
1937 Female, age 91, right hemisphere 4.2
1829 Male, age 74, unknown 4.1
1838 Male, age 80, right hemisphere 3.2
2466 Female, age 79, unknown 2.8
2647 Male, age 75, left hemisphere 1.6
2489 Female, age 72, unknown 1.4
Septal nuclei
nTPM: 4.6
2199 Male, age 80, right hemisphere 6.0
2031 Female, age 72, unknown 5.5
2629 Female, age 94, right hemisphere 4.6
2009 Female, age 91, both hemispheres 4.3
2394 Male, age 61, left hemisphere 4.2
1960 Male, age 74, unknown 4.1
2059 Female, age 85, both hemispheres 3.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 8.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 8.3
Samples: 246

Max nTPM: 34.6
Min nTPM: 0.3
Std nTPM: 6.4
Median nTPM: 6.6
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 34.6
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 31.6
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 27.8
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 26.9
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 26.1
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 25.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 25.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 24.5
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 24.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 23.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 23.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 8.1
Samples: 246

Max nTPM: 70.7
Min nTPM: 0.1
Std nTPM: 8.7
Median nTPM: 6.1
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 70.7
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 54.0
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 53.1
GTEX-R55E-0011-R6A-SM-2TC5T 20-29 years, male 42.9
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 42.6
GTEX-QVUS-0011-R6A-SM-3GACX 60-69 years, female 30.6
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 26.6
GTEX-1IY9M-0011-R6a-SM-D4P28 60-69 years, male 24.6
GTEX-T2IS-0011-R6A-SM-32QP2 20-29 years, female 23.9
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 23.8
GTEX-1399T-0011-R6b-SM-5K7YL 60-69 years, male 23.7
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Brain - Putamen (basal ganglia)
Average nTPM: 7.3
Samples: 205

Max nTPM: 50.7
Min nTPM: 0.1
Std nTPM: 7.5
Median nTPM: 5.1
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 50.7
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 50.4
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 45.0
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 29.1
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 27.0
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 25.1
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 22.3
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 21.3
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 20.0
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 19.2
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 18.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 32.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 25.5
FF:10164-103B2 76 years, female 25.5
Globus pallidus
Scaled Tags Per Million: 32.5
FF:10161-103A8 76 years, female 57.2
FF:10175-103C4 60 years, female 7.8
Nucleus accumbens
Scaled Tags Per Million: 31.6
FF:10037-101F1 23-56 years, mixed 31.6
Putamen
Scaled Tags Per Million: 13.2
FF:10176-103C5 60 years, female 13.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 72.9
Pig sample Sample description nTPM
Caudate
nTPM: 37.8
Samples: 4

Max nTPM: 45.9
Min nTPM: 33.3
Sample A Female 45.9
Sample B Female 37.3
Sample C Male 34.5
Sample D Male 33.3
Putamen
nTPM: 49.5
Samples: 4

Max nTPM: 62.0
Min nTPM: 43.9
Sample A Female 62.0
Sample B Female 44.9
Sample C Male 47.1
Sample D Male 43.9
Septum
nTPM: 72.9
Samples: 4

Max nTPM: 88.5
Min nTPM: 59.3
Sample A Female 78.8
Sample B Female 65.1
Sample C Male 88.5
Sample D Male 59.3
Ventral pallidum
nTPM: 48.7
Samples: 4

Max nTPM: 55.7
Min nTPM: 43.6
Sample A Female 55.7
Sample B Female 49.0
Sample C Male 46.3
Sample D Male 43.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 122.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 122.3
Samples: 4

Max nTPM: 138.1
Min nTPM: 115.7
Sample A Male 118.2
Sample B Male 115.7
Sample C Female 117.0
Sample D Female 138.1
Septum
nTPM: 71.6
Samples: 4

Max nTPM: 79.2
Min nTPM: 63.2
Sample A Male 63.2
Sample B Male 79.2
Sample C Female 78.2
Sample D Female 65.7
Ventral forebrain
nTPM: 90.7
Samples: 4

Max nTPM: 100.2
Min nTPM: 83.2
Sample A Male 94.5
Sample B Male 83.2
Sample C Female 100.2
Sample D Female 84.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.7
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.7
112203915 Antisense, RP_110421_01_G06, Mouse strain C57BL/6J (56 days, male) 2.3
1907 Antisense, RP_040507_02_E10, Mouse strain C57BL/6J (56 days, male) 1.1
Pallidum
Expression energy: 1.6
112203915 Antisense, RP_110421_01_G06, Mouse strain C57BL/6J (56 days, male) 2.1
1907 Antisense, RP_040507_02_E10, Mouse strain C57BL/6J (56 days, male) 1.0

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The Human Protein Atlas

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